Browse Element(s) Details


Os.10279.1.S1_at

Description gb:AK071410.1
DB_XREF= gi:32981433
TID=Os.10279.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative uricase (P0423B08.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089L18, full insert sequence.
FL= gb:AK071410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6452011/11Uricase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006144biological_processpurine base metabolism
GO:0004846molecular_functionurate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10279.1.S1_at--951--7851Chr01:37768817..37768841 (25 bp)
GGTATCCTTTTGAGCATGTTTCCCA
LOC_Os01g64520
Os.10279.1.S1_at--847--1531Chr01:37768805..37768829 (25 bp)
AGCATGTTTCCCAGATTCCATCAAA
LOC_Os01g64520
Os.10279.1.S1_at--1042--2831Chr01:37768782..37768806 (25 bp)
AAGTCATTCTGCTTCACACAAAGGT
LOC_Os01g64520
Os.10279.1.S1_at--1030--10731Chr01:37768736..37768760 (25 bp)
TTGCAGATACGTTCTTTGGTCCTCC
LOC_Os01g64520
Os.10279.1.S1_at--918--6111Chr01:37768703..37768727 (25 bp)
GAGTGTATAGTCCATCAGTGCAGAA
LOC_Os01g64520
Os.10279.1.S1_at--389--5231Chr01:37768548..37768680 (25 bp)
GAAGTTCTCAACAGGTTCCCGGATA
LOC_Os01g64520
Os.10279.1.S1_at--1065--7891Chr01:37768535..37768559 (25 bp)
GGTTCCCGGATATAGCATCTGTTCA
LOC_Os01g64520
Os.10279.1.S1_at--884--9771Chr01:37768508..37768532 (25 bp)
TAAGGATGCCGAACCTCCACTTTAT
LOC_Os01g64520
Os.10279.1.S1_at--729--8871Chr01:37767800..37767824 (25 bp)
TGATGTGTACCTGCCGACCGATGAA
LOC_Os01g64520
Os.10279.1.S1_at--123--8931Chr01:37767750..37767774 (25 bp)
TGAGCCGCCCCAAGTCAAAGTTGTA
LOC_Os01g64520
Os.10279.1.S1_at--770--2691Chr01:37767703..37767727 (25 bp)
AAGCTCTCGGTCTGGTTTCTGAGGA
LOC_Os01g64520
Target Sequence 
GGTATCCTTTTGAGCATGTTTCCCAGATTCCATCAAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTT
CTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACTATACCTGATGGCTAA
GGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAACCTCCACTTTATCCCTGTTAACTTAG
GGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAA
GCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis