Browse Element(s) Details


Os.14287.1.S1_a_at

Description gb:AK099677.1
DB_XREF= gi:32984886
TID=Os.14287.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.9 (P0505D12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070F08, full insert sequence.
FL= gb:AK099677.1 gb:AK068033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g645608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14287.1.S1_a_at--99--4791Chr01:37790219..37790243 (25 bp)
GCTGCCACAGATAGTTACGCTGACT
LOC_Os01g64560
Os.14287.1.S1_a_at--923--3811Chr01:37790220..37790244 (25 bp)
CTGCCACAGATAGTTACGCTGACTC
LOC_Os01g64560
Os.14287.1.S1_a_at--8--9211Chr01:37790221..37790245 (25 bp)
TGCCACAGATAGTTACGCTGACTCC
LOC_Os01g64560
Os.14287.1.S1_a_at--1079--4391Chr01:37790222..37790246 (25 bp)
GCCACAGATAGTTACGCTGACTCCA
LOC_Os01g64560
Os.14287.1.S1_a_at--689--4371Chr01:37790223..37790247 (25 bp)
CCACAGATAGTTACGCTGACTCCAG
LOC_Os01g64560
Os.14287.1.S1_a_at--90--3311Chr01:37790224..37790248 (25 bp)
CACAGATAGTTACGCTGACTCCAGT
LOC_Os01g64560
Os.14287.1.S1_a_at--869--2131Chr01:37790225..37790249 (25 bp)
ACAGATAGTTACGCTGACTCCAGTA
LOC_Os01g64560
Os.14287.1.S1_a_at--508--3431Chr01:37790226..37790250 (25 bp)
CAGATAGTTACGCTGACTCCAGTAT
LOC_Os01g64560
Target Sequence 
GCTGCCACAGATAGTTACGCTGACTCCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14287.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis