Browse Element(s) Details


Os.12398.1.A1_at

Description gb:AU066081
DB_XREF= gi:4969177
DB_XREF=AU066081
CLONE=S2544_2A
TID=Os.12398.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=4
UG=Os.12398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.11 (P0505D12.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6459011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed
LOC_Os01g64600NANA1+37817580..37823734retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.2.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.5.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12398.1.A1_at--743--5831Chr01:37799770..37799794 (25 bp)
GACCTCGCAATGCTGTACGCCAAGT
LOC_Os01g64590
Os.12398.1.A1_at--737--5771Chr01:37799680..37799704 (25 bp)
GACGAGGCGTTCGACACGTTCAGCG
LOC_Os01g64590
Os.12398.1.A1_at--10--7511Chr01:37799579..37799603 (25 bp)
GTGGTCCAGTCCAGCGAGCGGCAAC
LOC_Os01g64590
Os.12398.1.A1_at--1119--2051Chr01:37799472..37799496 (25 bp)
ACTTCGCCATGGATCAGAGCTGCTT
LOC_Os01g64590
Os.12398.1.A1_at--381--1371Chr01:37799457..37799481 (25 bp)
AGAGCTGCTTCGACTCGCTAGGTTT
LOC_Os01g64590
Os.12398.1.A1_at--472--8631Chr01:37799365..37799389 (25 bp)
TGGGAGGAGCCCAAGTACGACTCGT
LOC_Os01g64590
Os.12398.1.A1_at--945--5711Chr01:37799347..37799371 (25 bp)
GACTCGTTGGATTCGTTTCCCGACG
LOC_Os01g64590
Os.12398.1.A1_at--122--4431Chr01:37799320..37799344 (25 bp)
GCCATGAGCCTCCATGAGTGCATGA
LOC_Os01g64590
Os.12398.1.A1_at--1097--691Chr01:37799307..37799331 (25 bp)
ATGAGTGCATGATCGGCGCTCCTGA
LOC_Os01g64590
Os.12398.1.A1_at--473--491Chr01:37799296..37799320 (25 bp)
ATCGGCGCTCCTGATCATGATTGGA
LOC_Os01g64590
Os.12398.1.A1_at--386--4391Chr01:37799262..37799286 (25 bp)
GCCAAGGATTGGAGGCTCTTTACAT
LOC_Os01g64590
Target Sequence 
GACCTCGCAATGCTGTACGCCAAGTTTCTGAACCACCCGCCGACCGACGCCGGGCTCGGCGCCGTCACGCCGGAGTCGGG
AGGGCACGTCGACGAGGCGTTCGACACGTTCAGCGCGTCCAGCGATCTGAGCCCCGGCATCNTNGCGGCGGCGTCGGCGN
ANTTCGACCCGAACCAGGACGGGTTCGGCGAGTGGTCCAGTCCAGCGAGCGGCAACGACCCGACGAGTACTGCAACCACC
GCAACCACCTCCATGCTGTGCACGGANGCGAGCGTGCNAAGCCGCGCTCGGCGAGCTCAACTTCGCCATGGATCAGAGCT
GCTTCGACTCGCTAGGTTTGCCCACGGACGTCGCCGGCGCCGGCAGCCTGTCGTCGTGGTGCTCGATCGTGCCGAGCTTG
TCGACATGGGAGGAGCCCAAGTACGACTCGTTGGATTCGTTTCCCGACGACGCCATGAGCCTCCATGAGTGCATGATCGG
CGCTCCTGATCATGATTGGAGCGTGGATTGCCAAGGATTGGAGGCTCTTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12398.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis