Browse Element(s) Details


Os.20090.1.S1_at

Description gb:AK068362.1
DB_XREF= gi:32978380
TID=Os.20090.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anthocyanidine rhamnosyl-transferase (P0505D12.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145L16, full insert sequence.
FL= gb:AK068362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6454011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20090.1.S1_at--157--831Chr01:37778764..37778788 (25 bp)
AGGCTTCAAGGAGCGCGTCAACGGC
LOC_Os01g64540
Os.20090.1.S1_at--911--10491Chr01:37778760..37778784 (25 bp)
TTCAAGGAGCGCGTCAACGGCCGCG
LOC_Os01g64540
Os.20090.1.S1_at--380--1151Chr01:37778734..37778758 (25 bp)
AGTCGTCTGCCGAGGCTGGGTACCA
LOC_Os01g64540
Os.20090.1.S1_at--406--4511Chr01:37778726..37778750 (25 bp)
GCCGAGGCTGGGTACCACAGGTCAA
LOC_Os01g64540
Os.20090.1.S1_at--91--8251Chr01:37778721..37778745 (25 bp)
GGCTGGGTACCACAGGTCAAGTTCT
LOC_Os01g64540
Os.20090.1.S1_at--779--8631Chr01:37778718..37778742 (25 bp)
TGGGTACCACAGGTCAAGTTCTTGG
LOC_Os01g64540
Os.20090.1.S1_at--346--3731Chr01:37778693..37778717 (25 bp)
CTCACGCATCGGTCGGCGGGTTCCT
LOC_Os01g64540
Os.20090.1.S1_at--509--4111Chr01:37778630..37778654 (25 bp)
CGAACGGCGTCAGGCTGGTGCTGCT
LOC_Os01g64540
Os.20090.1.S1_at--242--4131Chr01:37778603..37778627 (25 bp)
CGCTGATGTTCGAGCAGGGCCTCAA
LOC_Os01g64540
Os.20090.1.S1_at--730--4231Chr01:37778564..37778588 (25 bp)
CCGAGAAGAAGGTTGCCGTCGAGGT
LOC_Os01g64540
Os.20090.1.S1_at--383--6711Chr01:37778515..37778539 (25 bp)
GTTCGCGGCCAACGACATCGTGGAC
LOC_Os01g64540
Target Sequence 
AGGCTTCAAGGAGCGCGTCAACGGCCGCGGAGTCGTCTGCCGAGGCTGGGTACCACAGGTCAAGTTCTTGGCTCACGCAT
CGGTCGGCGGGTTCCTGACGCACGCCGGCTGGAACTCCATCGCCGAGGGCCTCGCGAACGGCGTCAGGCTGGTGCTGCTG
CCGCTGATGTTCGAGCAGGGCCTCAACGCCAGGCAGCTCGCCGAGAAGAAGGTTGCCGTCGAGGTGGCTCGCGACGAGGA
CGACGGCTCGTTCGCGGCCAACGACATCGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis