Browse Element(s) Details


Os.12348.3.S1_a_at

Description gb:AK059415.1
DB_XREF= gi:32969433
TID=Os.12348.3
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H4 (P0506B12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D05, full insert sequence.
FL= gb:AK099054.1 gb:AK059415.1 gb:AK058610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4201011/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12348.3.S1_a_at--529--7731Chr04:24664847..24664871 (25 bp)
GGTGGTTTGATTATGAAGGGCCATC
LOC_Os04g42010
Os.12348.3.S1_a_at--838--7791Chr04:24663976..24664000 (25 bp)
GGTCGCCACTCGGACGGCCATGAAA
LOC_Os04g42010
Os.12348.3.S1_a_at--863--3751Chr04:24663968..24663992 (25 bp)
CTCGGACGGCCATGAAAGGGCAAAT
LOC_Os04g42010
Os.12348.3.S1_a_at--99--3791Chr04:24663939..24663963 (25 bp)
CTCGAAAAGTCGATGCTGCTGCTTA
LOC_Os04g42010
Os.12348.3.S1_a_at--717--6331Chr04:24663928..24663952 (25 bp)
GATGCTGCTGCTTAAAGGCCTCGTC
LOC_Os04g42010
Os.12348.3.S1_a_at--1040--851Chr04:24663913..24663937 (25 bp)
AGGCCTCGTCGTCTTATACTAGTAA
LOC_Os04g42010
Os.12348.3.S1_a_at--126--5591Chr04:24663859..24663883 (25 bp)
GAAATGTTTGCTCCGTTGCTTGCTT
LOC_Os04g42010
Os.12348.3.S1_a_at--514--3671Chr04:24663828..24663852 (25 bp)
CTTTGGGAGCAAACCTTTTGTGTTG
LOC_Os04g42010
Os.12348.3.S1_a_at--419--10411Chr04:24663813..24663837 (25 bp)
TTTTGTGTTGTGTTTCTTGTCGTGA
LOC_Os04g42010
Os.12348.3.S1_a_at--527--7431Chr04:24663804..24663828 (25 bp)
GTGTTTCTTGTCGTGAGCTATGCTC
LOC_Os04g42010
Os.12348.3.S1_a_at--1000--7371Chr04:24663792..24663816 (25 bp)
GTGAGCTATGCTCTTTGGAAGTAAG
LOC_Os04g42010
Target Sequence 
GGTGGTTTGATTATGAAGGGCCATCTTGTTACTTTGGAACCTGTGTCCGGTCAAGCTGAGAAGGATTATTGGAGTGCGAT
AAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGGGACTGGAAGAATAACAGGGGCGGGAGGCACT
TCGGTGGGAAGCGTGGTCGCCACTCGGACGGCCATGAAAGGGCAAATAAAGCTCGAAAAGTCGATGCTGCTGCTTAAAGG
CCTCGTCGTCTTATACTAGTAACCTCAGCTTATGAGCTCTAGTGAGGAACGGAAATGTTTGCTCCGTTGCTTGCTTCCAC
AACTTTGGGAGCAAACCTTTTGTGTTGTGTTTCTTGTCGTGAGCTATGCTCTTTGGAAGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12348.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis