Browse Element(s) Details


OsAffx.26423.1.S1_at

Description tigr:9632.m04002
TID=OsAffx.26423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 9, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4197011/11endo-1,4-beta-glucanase Cel1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0009504cellular_componentcell plate
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26423.1.S1_at--580--4371Chr04:24645831..24645855 (25 bp)
CCAAGGGTGGGCTCGCGCAGTTCAA
LOC_Os04g41970
OsAffx.26423.1.S1_at--323--4111Chr04:24645816..24645840 (25 bp)
CGCAGTTCAACCACGGGAAGGGCCA
LOC_Os04g41970
OsAffx.26423.1.S1_at--419--1831Chr04:24645747..24645771 (25 bp)
ACGCCGACTACATGGAGTCCGTCAA
LOC_Os04g41970
OsAffx.26423.1.S1_at--8--4311Chr04:24645699..24645723 (25 bp)
CCTACTTCATGACCGTCGACGATCT
LOC_Os04g41970
OsAffx.26423.1.S1_at--135--10651Chr04:24645577..24645691 (25 bp)
TTCGCCAGGTCTCAGGTGAACTACA
LOC_Os04g41970
OsAffx.26423.1.S1_at--1057--7151Chr04:24645569..24645589 (21 bp)
GTCTCAGGTGAACTACATTCTTGGG
LOC_Os04g41970
OsAffx.26423.1.S1_at--1101--7931Chr04:24645545..24645569 (25 bp)
GGATAACCCGAAGAAGATGAGCTAC
LOC_Os04g41970
OsAffx.26423.1.S1_at--590--9931Chr04:24645511..24645535 (25 bp)
TACGGCAAGAAGTACCCGCGGCGGC
LOC_Os04g41970
OsAffx.26423.1.S1_at--865--2711Chr04:24645448..24645472 (25 bp)
AAGTACTCGTGCACCGGCGGGTACA
LOC_Os04g41970
OsAffx.26423.1.S1_at--1141--8411Chr04:24645366..24645390 (25 bp)
GGCCGGACAAGAACGACCAGTTCAA
LOC_Os04g41970
OsAffx.26423.1.S1_at--310--9951Chr04:24645325..24645349 (25 bp)
TACGCGCAGAACGAGCCGACGTTGG
LOC_Os04g41970
Target Sequence 
CCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTCCTTCCTCGCCGCG
CTCTACGCCGACTACATGGAGTCCGTCAACGTCCCCGGCTGGTACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCG
CTCCTTCGCCAGGTCTCAGGTGAACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGA
AGTACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCGTGCACCGGCGGGTACAAG
TGGAGGGACACCAAGGGGGCCGACCCGAACGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAA
GGACGCGCGCCTCACCTACGCGCAGAACGAGCCGACGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis