Browse Element(s) Details


Os.49714.1.S1_at

Description gb:AK068782.1
DB_XREF= gi:32978807
TID=Os.49714.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159H18, full insert sequence.
FL= gb:AK068782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4195011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49714.1.S1_at--711--6131Chr04:24628740..24628761 (22 bp)
GAGGGTTGATGCAATGCTTCAGAAA
LOC_Os04g41950
Os.49714.1.S1_at--1048--1791Chr04:24628678..24628699 (22 bp)
ACCGCTGGCAGCTGCTTGATAGTGA
LOC_Os04g41950
Os.49714.1.S1_at--1109--5051Chr04:24628397..24628692 (25 bp)
GCAGCTGCTTGATAGTGACCGTGAT
LOC_Os04g41950
Os.49714.1.S1_at--661--7391Chr04:24628377..24628401 (25 bp)
GTGATGGCAAAGTTACCCCTGACGA
LOC_Os04g41950
Os.49714.1.S1_at--288--5071Chr04:24628348..24628372 (25 bp)
GCAGCTGCAGCAAATTATCTCAAAG
LOC_Os04g41950
Os.49714.1.S1_at--1059--10411Chr04:24628334..24628358 (25 bp)
TTATCTCAAAGACACTATAGGGAAG
LOC_Os04g41950
Os.49714.1.S1_at--160--8371Chr04:24628306..24628330 (25 bp)
GGCGTCCAAGAGCTTATTAGCAATC
LOC_Os04g41950
Os.49714.1.S1_at--1086--10371Chr04:24628032..24628056 (25 bp)
TTTTCCGCCGGTAAGCGCATGGCAG
LOC_Os04g41950
Os.49714.1.S1_at--204--3151Chr04:24627894..24627918 (25 bp)
AATTCCAACCTGTTGTGGGTTGCCA
LOC_Os04g41950
Os.49714.1.S1_at--220--1771Chr04:24627887..24627911 (25 bp)
ACCTGTTGTGGGTTGCCATTGAAAT
LOC_Os04g41950
Os.49714.1.S1_at--558--2291Chr04:24627866..24627890 (25 bp)
AAATGGACATGCTGAACGGCCAGAT
LOC_Os04g41950
Target Sequence 
GAGGGTTGATGCAATGCTTCAGAAATTAGAGAAAGAGATNGATGATGTTGATGCACGAATNGGCNACCGCTGGCAGCTGC
TTGATAGTGACCGTGATGGCAAAGTTACCCCTGACGAGGTNGCAGCTGCAGCAAATTATCTCAAAGACACTATAGGGAAG
GAAGGCGTCCAAGAGCTTATTAGCAATCTTTCTAAAGACAAAGATGGAAAGATCCTCGTTGAAGACATTGTGAAGCTGGC
ATCACAAACGGGAGAAAGCAACGAACAAGAAGAAACCCCNCGGCAATAGGTNGATAAACAGTCNCTTCCGTGGCTGTTGA
AGTTNCCANCCCACTCTTTTCCGCCGGTAAGCGCATGGCAGTGCCATGTNTNACAAAAATGGCAGGNACGGTCATTTTTT
TTNTTCCGACTGACTGCCGTGGAGAGAGTTAGCGTATAGTTAGGCATCAGGTTTCTATAGGTGAATGGCAACTGAAATTC
CAACCTGTTGTGGGTTGCCATTGAAATGGACATGCTGAACGGCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis