Browse Element(s) Details


Os.24827.1.S1_at

Description gb:AK111787.1
DB_XREF= gi:37988450
TID=Os.24827.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23914 putative RNA-binding domain protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095H18, full insert sequence.
FL= gb:AK111787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4191011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24827.1.S1_at--954--6291Chr04:24620235..24620259 (25 bp)
GATGACGGTTCTATCAACCATGCTC
LOC_Os04g41910
Os.24827.1.S1_at--57--2651Chr04:24620250..24620274 (25 bp)
AACCATGCTCTGATCCGTGATTATG
LOC_Os04g41910
Os.24827.1.S1_at--43--5371Chr04:24620316..24620340 (25 bp)
GAAGAGTCCACATAGCACGTCGATA
LOC_Os04g41910
Os.24827.1.S1_at--335--8371Chr04:24620345..24620369 (25 bp)
GGCGATTAATATTACTCTGCAGCTG
LOC_Os04g41910
Os.24827.1.S1_at--901--3771Chr04:24620359..24620383 (25 bp)
CTCTGCAGCTGATGGTCGATCAACT
LOC_Os04g41910
Os.24827.1.S1_at--275--8471Chr04:24620383..24620407 (25 bp)
TGGCGTTTAATATTGCTCTGTAGCT
LOC_Os04g41910
Os.24827.1.S1_at--945--1571Chr04:24620473..24620497 (25 bp)
AGCTCTTTGCGTAGGTTGGATCTTC
LOC_Os04g41910
Os.24827.1.S1_at--44--6631Chr04:24620487..24620511 (25 bp)
GTTGGATCTTCCATTTGCCATGTTA
LOC_Os04g41910
Os.24827.1.S1_at--853--1971Chr04:24620523..24620547 (25 bp)
ACTGCTTCTGGGTTTTACCTTCTAT
LOC_Os04g41910
Os.24827.1.S1_at--599--3691Chr04:24620544..24620568 (25 bp)
CTATCACCACCAGTACGTGTACATT
LOC_Os04g41910
Os.24827.1.S1_at--485--131Chr04:24620617..24620641 (25 bp)
ATTAACTTCTACTTCTAGGCTTGTA
LOC_Os04g41910
Target Sequence 
GATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTT
AGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATA
TTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAG
CTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACC
AGTACGTGTACATTATATAGATTAAACTTNTTTTTTTCCTGATTAACATGTTCGTTTNGACATATTAACTTCTACTTCTA
GGCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis