Browse Element(s) Details


Os.6933.1.S1_at

Description gb:AK065058.1
DB_XREF= gi:32975076
TID=Os.6933.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001J09, full insert sequence.
FL= gb:AK065058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4192011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6933.1.S1_at--895--5571Chr04:24622972..24622996 (25 bp)
GAAAGGGCACAAAAGCTAGCTCTTG
LOC_Os04g41920
Os.6933.1.S1_at--788--2891Chr04:24622934..24622958 (25 bp)
AAGGTCAAAGTCATCATCTTCTAAG
LOC_Os04g41920
Os.6933.1.S1_at--1161--391Chr04:24622682..24622706 (25 bp)
ATCAGAGTCAAGTTCCAGTTCATCG
LOC_Os04g41920
Os.6933.1.S1_at--1107--1411Chr04:24622618..24622642 (25 bp)
AGAAAGTCCAGGTCACGGTCCAGAT
LOC_Os04g41920
Os.6933.1.S1_at--982--931Chr04:24622527..24622551 (25 bp)
AGGAAGGACCTGTGCGGCTCTCTAA
LOC_Os04g41920
Os.6933.1.S1_at--915--4691Chr04:24622514..24622538 (25 bp)
GCGGCTCTCTAAATTCTTTGGGAAC
LOC_Os04g41920
Os.6933.1.S1_at--693--651Chr04:24622477..24622501 (25 bp)
ATGAATACCGGGAGGCCTGCAGCCA
LOC_Os04g41920
Os.6933.1.S1_at--920--5071Chr04:24622459..24622483 (25 bp)
GCAGCCAGAAGACCTCGTCGCATAA
LOC_Os04g41920
Os.6933.1.S1_at--970--3991Chr04:24622444..24622468 (25 bp)
CGTCGCATAATCTCTCTTGAGCTAT
LOC_Os04g41920
Os.6933.1.S1_at--162--9851Chr04:24622330..24622354 (25 bp)
TAAATCAATTTGACGGTGCGGCATT
LOC_Os04g41920
Os.6933.1.S1_at--299--5611Chr04:24622272..24622296 (25 bp)
GACAAGGGAGATATGCTGGCACTTA
LOC_Os04g41920
Target Sequence 
GAAAGGGCACAAAAGCTAGCTCTTGGAAGAAACCACTCAAGGTCAAAGTCATCATCTTCTAAGAAAGAGAAGAAGGATAA
AGATGCAAAGAAACGGAGTAAAAAGAGGAGAAAGCATAGAAGTTCATCAGAGTCAAGTTCCAGTTCATCGTCGGAATCAT
CAAGCAGTGATGATGAGGATAGGGATTCGAGAAAGTCCAGGTCACGGTCCAGATCGAAGAGGACAAAAAAGGATAAGAAG
TACNAGGTNCAAGATCCNNAAGCACAGGGGCAGTGATAGTGAGGAGGAAGGACCTGTGCGGCTCTCTAAATTCTTTGGGA
ACCCAAAGAAATAGATGAATACCGGGAGGCCTGCAGCCAGAAGACCTCGTCGCATAATCTCTCTTGAGCTATGAATTGAT
GGTTGTAGACTGTATCATTAAGCTCTAATTACTGTGTTAAGGTGGGAAAAAACCGATTACTGTATTACATCTCAAGAATG
TTAAATCAATTTGACGGTGCGGCATTTGAATATGAATTCATTGTAACATAGTAGTACGTGACAAGGGAGATATGCTGGCA
CTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis