Browse Element(s) Details


OsAffx.26422.1.S1_at

Description tigr:9632.m03994
TID=OsAffx.26422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4189011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed
LOC_Os04g41860Os.51201.1.S1_at11/114+24587090..24588139expressed protein
LOC_Os04g41860Os.51201.1.S1_x_at11/114+24587090..24588139expressed protein
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26422.1.S1_at--323--1831Chr04:24606661..24606685 (25 bp)
ACGCCGGAGAGAGCTGTATCGTGCT
LOC_Os04g41890
OsAffx.26422.1.S1_at--919--491Chr04:24606644..24606668 (25 bp)
ATCGTGCTGGAGAAGGAACCTCCTC
LOC_Os04g41890
OsAffx.26422.1.S1_at--513--9411Chr04:24606621..24606645 (25 bp)
TCGTCGGAGAGAGCTGCTACCGTGC
LOC_Os04g41890
OsAffx.26422.1.S1_at--188--9071Chr04:24606607..24606631 (25 bp)
TGCTACCGTGCTGGAGAGGGAACCT
LOC_Os04g41890
OsAffx.26422.1.S1_at--802--1331Chr04:24606593..24606617 (25 bp)
AGAGGGAACCTCGTCGGTGCCCCTG
LOC_Os04g41890
OsAffx.26422.1.S1_at--956--9431Chr04:24606580..24606604 (25 bp)
TCGGTGCCCCTGCTTGTCGTTCTCT
LOC_Os04g41890
OsAffx.26422.1.S1_at--132--10811Chr04:24606567..24606591 (25 bp)
TTGTCGTTCTCTCCGCGCCGCTAAG
LOC_Os04g41890
OsAffx.26422.1.S1_at--913--9791Chr04:24606546..24606570 (25 bp)
TAAGCTCGTCTCTCCGATCTGCGAC
LOC_Os04g41890
OsAffx.26422.1.S1_at--727--1931Chr04:24606523..24606547 (25 bp)
ACGGAGAGGGACGTCACGCCAGCAC
LOC_Os04g41890
OsAffx.26422.1.S1_at--1098--7091Chr04:24606511..24606535 (25 bp)
GTCACGCCAGCACCGGTAGAGAGAA
LOC_Os04g41890
OsAffx.26422.1.S1_at--849--3971Chr04:24606472..24606496 (25 bp)
CGGGCTGTCACACCCCAATTTGGCA
LOC_Os04g41890
Target Sequence 
ACGCCGGAGAGAGCTGTATCGTGCTGGAGAAGGAACCTCCTCGTCGGAGAGAGCTGCTACCGTGCTGGAGAGGGAACCTC
GTCGGTGCCCCTGCTTGTCGTTCTCTCCGCGCCGCTAAGCTCGTCTCTCCGATCTGCGACGGAGAGGGACGTCACGCCAG
CACCGGTAGAGAGAAGGGCGAGGCCGCCGCGGGCTGTCACACCCCAATTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis