Browse Element(s) Details


Os.51201.1.S1_at

Description gb:AK061559.1
DB_XREF= gi:32971577
TID=Os.51201.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D02, full insert sequence.
FL= gb:AK061559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41840Os.38395.3.S1_x_at11/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.2.S1_x_at9/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.4.S1_x_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.1.S1_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.5.S1_at2/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed
LOC_Os04g41860Os.51201.1.S1_at11/114+24587090..24588139expressed protein
LOC_Os04g41860Os.51201.1.S1_x_at11/114+24587090..24588139expressed protein
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51201.1.S1_at--251--8691Chr04:24587591..24587615 (25 bp)
TGTGCGCGCCTATCTCGTCGTACAA
LOC_Os04g41860
Os.51201.1.S1_at--593--9511Chr04:24587603..24587627 (25 bp)
TCTCGTCGTACAATGAGCAGGCGCT
LOC_Os04g41860
Os.51201.1.S1_at--922--3771Chr04:24587604..24587628 (25 bp)
CTCGTCGTACAATGAGCAGGCGCTC
LOC_Os04g41860
Os.51201.1.S1_at--232--9411Chr04:24587605..24587629 (25 bp)
TCGTCGTACAATGAGCAGGCGCTCT
LOC_Os04g41860
Os.51201.1.S1_at--592--7211Chr04:24587607..24587631 (25 bp)
GTCGTACAATGAGCAGGCGCTCTAC
LOC_Os04g41860
Os.51201.1.S1_at--401--1511Chr04:24588027..24588051 (25 bp)
AGCAGCCGAGCCGACGTCACGGAGG
LOC_Os04g41860
Os.51201.1.S1_at--271--2671Chr04:24588059..24588083 (25 bp)
AAGCCGTACCCATCGCAGCGTAACA
LOC_Os04g41860
Os.51201.1.S1_at--220--1671Chr04:24588060..24588084 (25 bp)
AGCCGTACCCATCGCAGCGTAACAG
LOC_Os04g41860
Os.51201.1.S1_at--309--6991Chr04:24588064..24588088 (25 bp)
GTACCCATCGCAGCGTAACAGCGAA
LOC_Os04g41860
Os.51201.1.S1_at--1135--9811Chr04:24588079..24588103 (25 bp)
TAACAGCGAAGCCTCCCTGCTTGTC
LOC_Os04g41860
Os.51201.1.S1_at--843--5411Chr04:24588086..24588110 (25 bp)
GAAGCCTCCCTGCTTGTCCCTGTCT
LOC_Os04g41860
Target Sequence 
TGTGCGCGCCTATCTCGTCGTACAATGAGCAGGCGCTCTACTTCCAGGCGGGCGACGTGGCGCCGCGCCGGAGCTACAGC
TACCCGCGGGCGTCGTCGGCGTCGGCGTCCGGGTGCAGCGGAGGCGGAAACAGCAACCCGCTGGTGGCGCCGCCGCCCGC
GGCCGAGCAGAGGGCGCTGATGAGGACGCCTGGCCCCGGCGGGGAGAGCGCGAGGCGGCCGGTGTTCCGCGGCAAGTCGC
TGACGGACGACATCCTGATGCGGCGGTTCGTCGTCGACGAGGAGGCCACGCGGCGGCGCAACGAGATGGAGGTGATCCGG
CGCCGCCACGCGGCCGCCGCCAAGCGGCGGCGCCTCGGCCCCAGCCCGCTCCGCCGGATGGCCCTGGCGGAATCGGAGTC
GGAGGCCGACGACGAGGAGGAGACGACGACGACGGAAGCAGCCGAGCCGACGTCACGGAGGAAACCCCAAGCCGTACCCA
TCGCAGCGTAACAGCGAAGCCTCCCTGCTTGTCCCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis