Browse Element(s) Details


Os.17377.1.S1_at

Description gb:AK060753.1
DB_XREF= gi:32970771
TID=Os.17377.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-G10, full insert sequence.
FL= gb:AK103154.1 gb:AK060753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4185011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41820Os.51967.1.S1_at5/114+24550808..24554252bZIP transcription factor family protein
LOC_Os04g41830Os.5888.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41830Os.49546.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41840Os.38395.3.S1_x_at11/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.2.S1_x_at9/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.4.S1_x_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.1.S1_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.5.S1_at2/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed
LOC_Os04g41860Os.51201.1.S1_at11/114+24587090..24588139expressed protein
LOC_Os04g41860Os.51201.1.S1_x_at11/114+24587090..24588139expressed protein
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17377.1.S1_at--338--5271Chr04:24582162..24582186 (25 bp)
GAATGGGTCATCTTGGCAAACGATT
LOC_Os04g41850
Os.17377.1.S1_at--685--5131Chr04:24582177..24582201 (25 bp)
GCAAACGATTCAGATCTCCAGGAGT
LOC_Os04g41850
Os.17377.1.S1_at--737--9231Chr04:24582193..24582217 (25 bp)
TCCAGGAGTGCGTCGATGTTCTCGA
LOC_Os04g41850
Os.17377.1.S1_at--1011--10391Chr04:24582211..24582235 (25 bp)
TTCTCGACTCCATAGGGTCGCGAAT
LOC_Os04g41850
Os.17377.1.S1_at--897--7791Chr04:24582226..24582250 (25 bp)
GGTCGCGAATCGTGAAACTCCAGGT
LOC_Os04g41850
Os.17377.1.S1_at--233--9231Chr04:24582244..24582268 (25 bp)
TCCAGGTACGAGATCTCCCTTGCAT
LOC_Os04g41850
Os.17377.1.S1_at--23--5031Chr04:24582299..24582323 (25 bp)
GCAGTTGGCGGCACATAGCTCATAA
LOC_Os04g41850
Os.17377.1.S1_at--436--7611Chr04:24582327..24582351 (25 bp)
GGTAGGGAATCCTGGGCTCCTGTCA
LOC_Os04g41850
Os.17377.1.S1_at--179--10331Chr04:24582450..24582474 (25 bp)
TTTAGCTAGCATCAACGGTGGAGTC
LOC_Os04g41850
Os.17377.1.S1_at--55--7731Chr04:24582466..24582490 (25 bp)
GGTGGAGTCATCATCCCACACAGAT
LOC_Os04g41850
Os.17377.1.S1_at--218--9071Chr04:24582585..24582609 (25 bp)
TGCTTGTGAATCGTGGTCCTGGCTC
LOC_Os04g41850
Target Sequence 
GAATGGGTCATCTTGGCAAACGATTCAGATCTCCAGGAGTGCGTCGATGTTCTCGACTCCATAGGGTCGCGAATCGTGAA
ACTCCAGGTACGAGATCTCCCTTGCATCGTCAGCAGCTCGGGAAGCAGCACCTGCTTGCAGTTGGCGGCACATAGCTCAT
AACATGGTAGGGAATCCTGGGCTCCTGTCACCCAACCCTCAACTGTACCATATTACAGTAGGCTAGTCTTTGTTGTAGCA
ACAGCCAATAGGGTTTGTATTATGNATGCAGTAGGGTATATTATGCAGTTTAGCTAGCATCAACGGTGGAGTCATCATCC
CACACAGATCAGATCATATTCTCGCAAGAAACAATGCCATTAAGGTCTTAAGTTTGTTGAACACGAGTACATGACNATAA
CCTGTTGTCATGATGGTGTACNGTGCTTGTGAATCGTGGTCCTGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis