Browse Element(s) Details


Os.51967.1.S1_at

Description gb:AK064429.1
DB_XREF= gi:32974447
TID=Os.51967.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-C11, full insert sequence.
FL= gb:AK064429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g418205/11bZIP transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein
LOC_Os04g41780OsAffx.14233.1.S1_at11/114+24537204..24537786hypothetical protein
LOC_Os04g41790OsAffx.26420.1.S1_at11/114+24540530..24541023hypothetical protein
LOC_Os04g41800Os.56083.1.S1_at11/114+24542012..24542611expressed protein
LOC_Os04g41810OsAffx.26421.1.S1_s_at11/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.18474.1.S1_at3/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.54560.1.S1_x_at1/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41820Os.51967.1.S1_at5/114+24550808..24554252bZIP transcription factor family protein
LOC_Os04g41830Os.5888.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41830Os.49546.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41840Os.38395.3.S1_x_at11/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.2.S1_x_at9/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.4.S1_x_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.1.S1_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.5.S1_at2/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51967.1.S1_at--557--1091Chr04:24551078..24551102 (25 bp)
AGTGGGAAACTTTGGCCTCTCCTCA
LOC_Os04g41820
Os.51967.1.S1_at--572--10851Chr04:24551052..24551076 (25 bp)
TTGGAGGCGCCAATCCACAAGGTTA
LOC_Os04g41820
Os.51967.1.S1_at--332--1171Chr04:24551020..24551044 (25 bp)
AGTCACATACAATCTCTTCTGGCAG
LOC_Os04g41820
Os.51967.1.S1_at--1087--1531Chr04:24550932..24550956 (25 bp)
AGCATCATCATCTTAGCACGGTCCA
LOC_Os04g41820
Os.51967.1.S1_at--834--4971Chr04:24550819..24550843 (25 bp)
GCATCTGAAAGCCACGCTCTGAGGA
LOC_Os04g41820
Os.51967.1.S1_at--862--911Chr04:24550775..24550799 (25 bp)
AGGCTCATGGCGGTTGTCAGTAATA
NONE
Os.51967.1.S1_at--115--6111Chr04:24550734..24550758 (25 bp)
GAGTGACTCATGCATAGGCTAGCGC
NONE
Os.51967.1.S1_at--498--5391Chr04:24550679..24550703 (25 bp)
GAAGCACTTAGATGCCTGCAGCCTG
NONE
Os.51967.1.S1_at--1091--9031Chr04:24550663..24550687 (25 bp)
TGCAGCCTGTAGAATGTAGATCCCA
NONE
Os.51967.1.S1_at--565--6951Chr04:24550648..24550672 (25 bp)
GTAGATCCCATTCAGTTGTAAGTTG
NONE
Os.51967.1.S1_at--695--7071Chr04:24550600..24550624 (25 bp)
GTAATTCACCGGTGCCATGGAGTAT
NONE
Target Sequence 
AGTGGGAAACTTTGGCCTCTCCTCATTTGGAGGCGCCAATCCACAAGGTTACCAGCGCAGTCACATACAATCTCTTCTGG
CAGCCCAGCAGCTGCAGCAGCTACAGATCCACTCCCAGCACCAGCAGCAACAGATGCATCTGCAGCAGCATCATCATCTT
AGCACGGTCCAACAGCAGCTTCTGCAGGAGGGGTTGCCCTTGCCAGGGGATCTGAAGATGAAAGGAATTGTGGCGGCATC
CCATGCACAGAACGCCGGCGCATCTGAAAGCCACGCTCTGAGGAGTGAGCCGTGAGTTGGCATAGGCTCATGGCGGTTGT
CAGTAATAATAACATGTTGTATCTGAGTGACTCATGCATAGGCTAGCGCAGTATCTAGGTAAAATTTCAGACTATCTATG
AAGCACTTAGATGCCTGCAGCCTGTAGAATGTAGATCCCATTCAGTTGTAAGTTGTAGAACTGATGAGGCAAAACTGAGT
AATTCACCGGTGCCATGGAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis