Browse Element(s) Details


Os.54560.1.S1_x_at

Description gb:AK105715.1
DB_XREF= gi:32990924
TID=Os.54560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F03, full insert sequence.
FL= gb:AK105715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0113011/11expressed protein
LOC_Os02g303304/11hypothetical protein
LOC_Os04g418101/11DOMON domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54560.1.S1_x_at--1104--9172Chr02:18062275..18062298 (24 bp)
TGCCGTCGTCCATGGAGCCGAGTGA
NONE
Os.54560.1.S1_x_at--1159--4072Chr02:18062331..18062355 (25 bp)
CGAGCTGCACGGTTTGGTGGACCAT
NONE
Os.54560.1.S1_x_at--520--7731Chr02:73642..73666 (25 bp)
GGTGGACCATGATGTAGCGCAGCTC
LOC_Os02g01130
Os.54560.1.S1_x_at--560--751Chr02:73631..73655 (25 bp)
ATGTAGCGCAGCTCCTCATCGAGAA
LOC_Os02g01130
Os.54560.1.S1_x_at--756--9371Chr02:73613..73637 (25 bp)
TCGAGAAGCACCATGGCGAGCTGCA
LOC_Os02g01130
Os.54560.1.S1_x_at--623--7772Chr02:18063690..18063712 (23 bp)
GGTGCTTTCTCTGAGCTAAGCCATG
LOC_Os02g30330
Os.54560.1.S1_x_at--989--8252Chr02:18063890..18063920 (25 bp)
GGCAGCTTCTTCTTCGATGCAGCAT
LOC_Os02g30330
Os.54560.1.S1_x_at--584--6331Chr02:73375..73399 (25 bp)
GATGCAGCATCTGTTCTTGCTCTGC
LOC_Os02g01130
Os.54560.1.S1_x_at--1143--4773Chr04:24547598..24547622 (25 bp)
GCTGCCTGACCGTCTGGAAGCAGGA
LOC_Os04g41810
Os.54560.1.S1_x_at--413--7251Chr02:73221..73245 (25 bp)
GTCCTGCGGGTGTGTATGCTACTGA
LOC_Os02g01130
Os.54560.1.S1_x_at--1158--5212Chr02:18064088..18064112 (25 bp)
GAATTTTGCAGTCCTACCAGTTATT
LOC_Os02g30330
Target Sequence 
TGCCGTCGTCCATGGAGCCGAGTGAGAGGCGGCGCAGGGAGAAGATGCCCGTGGGGTCGAGCTGCACGGTTTGGTGGACC
ATGATGTAGCGCAGCTCCTCATCGAGAAGCACCATGGCGAGCTGCACGGCGACCCCGGTGGAGGAGGAGGACTCCGCGCC
GCCGCCGCCGCCGCCGCCGCCGCTGCCGCGCGCGAGGAGCTCGACGGCCGGTGCTTTCTCTGAGCTAAGCCATGGCAAGA
AAGGCACGAGAGGAAGAGGAAGAAGAAGAAGAAGAGGAAGGAGAAGAGCAGTCAGGGCACGGGGATCAGTGGCAAGCCAA
TGGGGGCAGCTTCTTCTTCGATGCAGCATCTGTTCTTGCTCTGCCGCCTCCTCGGCTTCTGCTTTGCGTTCACGGCGAGC
CAGCAGCAGCAGTCGGACTCGTGTAGCAGCGCCGGCGTCGCGGTCGCGCATCTCGCCTTCTGCTGCCTGACCGTCTGGAA
GCAGGAGGACTTCGTCCTGCGGGTGTGTATGCTACTGAATTTTGCAGTCCTACCAGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54560.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis