Browse Element(s) Details


OsAffx.11855.1.S1_at

Description tigr:9630.m00013
TID=OsAffx.11855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0112011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11855.1.S1_at--1054--10651Chr02:66860..66883 (24 bp)
TTCCTTACCTCTTCGCTCTTTTAGG
LOC_Os02g01120
OsAffx.11855.1.S1_at--598--9571Chr02:66732..66874 (25 bp)
TCTTCGCTCTTTTAGGCCTCAATTT
LOC_Os02g01120
OsAffx.11855.1.S1_at--997--10631Chr02:66730..66872 (25 bp)
TTCGCTCTTTTAGGCCTCAATTTGT
LOC_Os02g01120
OsAffx.11855.1.S1_at--1107--4791Chr02:66727..66869 (25 bp)
GCTCTTTTAGGCCTCAATTTGTATT
LOC_Os02g01120
OsAffx.11855.1.S1_at--706--3671Chr02:66724..66866 (25 bp)
CTTTTAGGCCTCAATTTGTATTTCA
LOC_Os02g01120
OsAffx.11855.1.S1_at--858--211Chr02:66719..66742 (24 bp)
AGGCCTCAATTTGTATTTCAACCTG
LOC_Os02g01120
OsAffx.11855.1.S1_at--1157--4431Chr02:66717..66741 (25 bp)
GCCTCAATTTGTATTTCAACCTGGT
LOC_Os02g01120
OsAffx.11855.1.S1_at--388--3191Chr02:66713..66737 (25 bp)
CAATTTGTATTTCAACCTGGTGCCC
LOC_Os02g01120
OsAffx.11855.1.S1_at--49--211Chr02:66711..66735 (25 bp)
ATTTGTATTTCAACCTGGTGCCCCA
LOC_Os02g01120
OsAffx.11855.1.S1_at--460--10771Chr02:66709..66733 (25 bp)
TTGTATTTCAACCTGGTGCCCCAAA
LOC_Os02g01120
OsAffx.11855.1.S1_at--807--6871Chr02:66707..66731 (25 bp)
GTATTTCAACCTGGTGCCCCAAAGT
LOC_Os02g01120
Target Sequence 
TTCCTTACCTCTTCGCTCTTTTAGGCCTCAATTTGTATTTCAACCTGGTGCCCCAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis