Browse Element(s) Details


Os.28066.1.S1_s_at

Description gb:AK072570.1
DB_XREF= gi:32982593
TID=Os.28066.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126M20, full insert sequence.
FL= gb:AK072570.1 gb:AK105706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0117011/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016567biological_processprotein ubiquitination
GO:0042023biological_processDNA endoreduplication
GO:0000151cellular_componentubiquitin ligase complex
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28066.1.S1_s_at--41--5951Chr02:89684..89708 (25 bp)
GAGAAGGTATCCCAAGGTGGTTCCA
LOC_Os02g01170
Os.28066.1.S1_s_at--990--7491Chr02:89668..89692 (25 bp)
GTGGTTCCACCTCGTTGAACTCAAA
LOC_Os02g01170
Os.28066.1.S1_s_at--522--1051Chr02:89610..89634 (25 bp)
AGGTGTTTCTCTCCTTGATAGCATC
LOC_Os02g01170
Os.28066.1.S1_s_at--166--2131Chr02:89583..89607 (25 bp)
ACAGGCAGAACTCCCATGTGATCTA
LOC_Os02g01170
Os.28066.1.S1_s_at--577--9631Chr02:89499..89523 (25 bp)
TCAGTTGTCCCCTCGTTTAAGAGTA
LOC_Os02g01170
Os.28066.1.S1_s_at--122--2831Chr02:89375..89399 (25 bp)
AAGTTGACACCAAAGCTTGCTCGGC
LOC_Os02g01170
Os.28066.1.S1_s_at--382--651Chr02:89348..89372 (25 bp)
ATGCAGGATGTTCTTGCCCTCTGTA
LOC_Os02g01170
Os.28066.1.S1_s_at--1091--10071Chr02:89325..89349 (25 bp)
TAGTGGCAGTTTACCTTCTTGGTGT
LOC_Os02g01170
Os.28066.1.S1_s_at--609--7011Chr02:89247..89271 (25 bp)
GTACTTTTACTCCACAGCATTTGGG
LOC_Os02g01170
Os.28066.1.S1_s_at--452--8711Chr02:89221..89245 (25 bp)
TGTCCCGTGCTTTGAATCGACTTCA
LOC_Os02g01170
Os.28066.1.S1_s_at--992--8751Chr02:89118..89142 (25 bp)
TGTTTCCCGTAACCGTATTCTGGAT
LOC_Os02g01170
Target Sequence 
GAGAAGGTATCCCAAGGTGGTTCCACCTCGTTGAACTCAAAATCAGATCCTTCAAGATCTATATCTGAATTGAAAGGTGT
TTCTCTCCTTGATAGCATCTTACAGGCAGAACTCCCATGTGATCTAGAGAGAACAAACTCAACTTACAACATTTTAGCAC
TATTGCGTGTATTAGAGGGGCTCAATCAGTTGTCCCCTCGTTTAAGAGTACATGCTGCTTCTGATGATTTTGCTGAGGGA
AAAATCACCACACTGGATGAGCTATATAGAACTGGAGCCAAGGTACCGTCAGAAGAGTTTGTTAATAGTAAGTTGACACC
AAAGCTTGCTCGGCAAATGCAGGATGTTCTTGCCCTCTGTAGTGGCAGTTTACCTTCTTGGTGTTACCAGATGACCAAAG
CCTGCCCTTTCTTGTTTCCCTTTGAAACAAGGAGACAGTACTTTTACTCCACAGCATTTGGGTTGTCCCGTGCTTTGAAT
CGACTTCAGCAACAACAGGGTGACAACCAAAATGCTGGTGGCGAAAGGGAGATCCGATTTGGAAGGCTACAACGTCAAAA
AGTTCGTGTTTCCCGTAACCGTATTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28066.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis