Browse Element(s) Details


Os.23925.1.S1_at

Description gb:AK102833.1
DB_XREF= gi:32988042
TID=Os.23925.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109J12, full insert sequence.
FL= gb:AK102833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0118010/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23925.1.S1_at--1144--6571Chr02:98681..98705 (25 bp)
GATTGCAGCCTGTGTCAGCTATGAT
LOC_Os02g01180
Os.23925.1.S1_at--867--6371Chr02:98351..98375 (25 bp)
GATCCGACAAGCTTATTCGACTGTT
LOC_Os02g01180
Os.23925.1.S1_at--725--8111Chr02:98301..98325 (25 bp)
GGACGAGCCCAGTAGTAGCTTCTTT
LOC_Os02g01180
Os.23925.1.S1_at--651--6751Chr02:98182..98206 (25 bp)
GTTCACTCATTTTGCGGTACCAATC
LOC_Os02g01180
Os.23925.1.S1_at--73--2071Chr02:98147..98171 (25 bp)
ACTTCCACGGTTGTCTTTTGCAGTA
LOC_Os02g01180
Os.23925.1.S1_at--324--1191Chr02:98126..98150 (25 bp)
AGTACCTGCTTGTTCATCTTTTATC
LOC_Os02g01180
Os.23925.1.S1_at--961--431Chr02:98111..98135 (25 bp)
ATCTTTTATCGACCTTTTGACGTGT
LOC_Os02g01180
Os.23925.1.S1_at--369--10751Chr02:98095..98119 (25 bp)
TTGACGTGTGGGTACATGCGCCTGT
LOC_Os02g01180
Os.23925.1.S1_at--908--4551Chr02:98078..98102 (25 bp)
GCGCCTGTGCTCATGCGAATATACA
LOC_Os02g01180
Os.23925.1.S1_at--208--3111Chr02:98043..98067 (25 bp)
AATATGCACTCGTTGCGTATGCGCA
LOC_Os02g01180
Os.23925.1.S1_at--52--291Chr02:98001..98025 (25 bp)
ATAGGGAGGCAATTCTCGTCATTGT
NONE
Target Sequence 
GATTGCAGCCTGTGTCAGCTATGATGCTCAAAGAATTCACAGGTCCTGATATATTTGTGGATACCAGAAAGGAAGAAAAA
GTGAAATCGTCAAGAGATGCAATGGGGAGATCCGACAAGCTTATTCGACTGTTGACAGACCACCCANCCCGTGCCCGTGG
ACGAGCCCAGTAGTAGCTTCTTTCTTCTCTTTTGGTCGTGGAGGTGTCCTGAGCTGCCTCTCTACTTTCTTTCTTTCTTG
TTTACAAGGTCGATCGGAAGATNTTATTTCGTAGGATGTTCACTCATTTTGCGGTACCAATCACGTACTACTACTTCCAC
GGTTGTCTTTTGCAGTACCTGCTTGTTCATCTTTTATCGACCTTTTGACGTGTGGGTACATGCGCCTGTGCTCATGCGAA
TATACATTTCTATGTAAATATGCACTCGTTGCGTATGCGCAATGCAGTTCAAATGTAAATAGGGAGGCAATTCTCGTCAT
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis