Browse Element(s) Details


Os.20298.1.S1_at

Description gb:AK106664.1
DB_XREF= gi:32991873
TID=Os.20298.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H05, full insert sequence.
FL= gb:AK106664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20298.1.S1_at--380--4471Chr02:111755..111857 (25 bp)
GCCTGCACCTTCGACAAGTGGGCGG
LOC_Os02g01190
Os.20298.1.S1_at--463--3351Chr02:111760..111862 (25 bp)
CACCTTCGACAAGTGGGCGGACGTT
LOC_Os02g01190
Os.20298.1.S1_at--541--2211Chr02:112131..112155 (25 bp)
ACAAGCTTCTCCTCGAGGGTGCGCG
LOC_Os02g01190
Os.20298.1.S1_at--128--9751Chr02:112211..112235 (25 bp)
TAATTACTACTCCTGCTTGCTTACT
LOC_Os02g01190
Os.20298.1.S1_at--40--4931Chr02:112225..112249 (25 bp)
GCTTGCTTACTCGATCGCTAATGCA
LOC_Os02g01190
Os.20298.1.S1_at--526--1991Chr02:112233..112257 (25 bp)
ACTCGATCGCTAATGCACTCGTTTT
LOC_Os02g01190
Os.20298.1.S1_at--611--10531Chr02:112257..112281 (25 bp)
TTCATTTTATTACTCGCTACGCTAA
LOC_Os02g01190
Os.20298.1.S1_at--532--9911Chr02:112267..112291 (25 bp)
TACTCGCTACGCTAATGTATTACTA
LOC_Os02g01190
Os.20298.1.S1_at--1159--711Chr02:112281..112305 (25 bp)
ATGTATTACTAGTGTCTCGACTCAA
LOC_Os02g01190
Os.20298.1.S1_at--376--7451Chr02:112292..112316 (25 bp)
GTGTCTCGACTCAATACTTAATTGG
LOC_Os02g01190
Os.20298.1.S1_at--160--8011Chr02:112318..112342 (25 bp)
GGATGGATTTTAATACTACACTACT
LOC_Os02g01190
Target Sequence 
GCCTGCACCTTCGACAAGTGGGCGGACGTTNGGATTNGCNACGGGTNGCAANCTGGAAGGTGNTGACGCCCNNAACACGA
CGGTGGCCATGGCGTTCGGCCCCNGCCNGCGGCGCAGANGGTACGGCCCCGACATGNACGCTNGCGGGAGGCGCTGGACG
GGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCC
GGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCT
CCTCGAGGGTGCGCGCTTCCGCCNCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTAC
TCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGA
CTCAATACTTAATTGGTGGATGGATTTTAATACTACACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis