Browse Element(s) Details


Os.35510.1.S1_at

Description gb:AK067143.1
DB_XREF= gi:32977161
TID=Os.35510.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095M22, full insert sequence.
FL= gb:AK067143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0122010/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35510.1.S1_at--969--5251Chr02:125860..125884 (25 bp)
GAATCCTCTGTTTGTGGAGCAGTTC
LOC_Os02g01220
Os.35510.1.S1_at--708--3711Chr02:126065..126089 (25 bp)
CTAGCATGCGTTGATCTCCTTGAAG
LOC_Os02g01220
Os.35510.1.S1_at--20--2191Chr02:126883..126907 (25 bp)
ACACTCCTCCTCATACAATGTATTA
LOC_Os02g01220
Os.35510.1.S1_at--432--9811Chr02:126906..126930 (25 bp)
TAACGCTTTGCAGCACCGATGAGAT
LOC_Os02g01220
Os.35510.1.S1_at--1001--2471Chr02:126943..126967 (25 bp)
AACACGGACTCTACTGTATCTACTG
LOC_Os02g01220
Os.35510.1.S1_at--943--6891Chr02:126958..126982 (25 bp)
GTATCTACTGTATCTCATTCCAACC
LOC_Os02g01220
Os.35510.1.S1_at--962--3631Chr02:127011..127035 (25 bp)
CTTCGTGTGCCCTGCCATGTATATG
LOC_Os02g01220
Os.35510.1.S1_at--387--6891Chr02:127029..127053 (25 bp)
GTATATGTATGTGCGTCCTGTTTTC
LOC_Os02g01220
Os.35510.1.S1_at--1117--10371Chr02:127049..127073 (25 bp)
TTTTCCTGTTTGTTACTACTGGTAT
LOC_Os02g01220
Os.35510.1.S1_at--319--3051NONE
AATCTCCCGGGATGACATTCAATCA
NONE
Os.35510.1.S1_at--819--3071Chr02:127322..127346 (25 bp)
AATCAAACGTTTGCTTCTCTTGCCA
LOC_Os02g01220
Target Sequence 
GAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTNGTGAGCAAAGAGGAGCATGTGGTTGTGGGGTGCCAAAGCGGGAAGA
GGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCNGGGTTCAAGAACGTGAAGAANATGGGANGGAGGCNTACGCNAGCG
TGGCTCNGACAATGGATTCCCCATAAACACTCCTCCTCATACAATGTATTAACGCTTTGCAGCACCGATGAGATGAGCGA
GTGATAAACACGGACTCTACTGTATCTACTGTATCTCATTCCAACCCCTCTTNTCATCTGCCTGCTAGCCGCTGCTTCGT
GTGCCCTGCCATGTATATGTATGTGCGTCCTGTTTTCCTGTTTGTTACTACTGGTATTATGGAGGCAGCCAATTGAATAA
AATTGATCATCATGCATGCAATGCACGATGCGTCTNCAAATCTCCCGGGATGACATTCAATCAACCAAGTAGCTACACAT
GTTCAAGGACTTAAGAATCATCAATCAAACGTTTGCTTCTCTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis