Browse Element(s) Details


Os.9579.1.S1_at

Description gb:AK061193.1
DB_XREF= gi:32971211
TID=Os.9579.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F11, full insert sequence.
FL= gb:AK061193.1 gb:AK103689.1 gb:AK061558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0125011/11Small nuclear ribonucleoprotein Sm D3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9579.1.S1_at--1111--711Chr02:137597..137621 (25 bp)
ATGATCATACCCGACATGCTCAAGA
LOC_Os02g01250
Os.9579.1.S1_at--965--9631Chr02:137449..137473 (25 bp)
TCAGCTATTGGTGTTGGCCGTGGCC
LOC_Os02g01250
Os.9579.1.S1_at--541--8351Chr02:135638..135662 (25 bp)
GGCGGTAGATTTACGGGCAGCTCAT
LOC_Os02g01250
Os.9579.1.S1_at--408--7271Chr02:135588..135612 (25 bp)
GTCCAGGGAGTCTTTGTGTTCATCA
LOC_Os02g01250
Os.9579.1.S1_at--806--4031Chr02:135556..135580 (25 bp)
CGTTGGTTCAGCAGCCAGAGTGCAT
LOC_Os02g01250
Os.9579.1.S1_at--1025--711Chr02:135518..135542 (25 bp)
ATGTACCTCCATCCAGTTTAGTTTG
LOC_Os02g01250
Os.9579.1.S1_at--280--4951Chr02:135471..135495 (25 bp)
GCATGCCGGTGGTGTTAACTCGTAA
LOC_Os02g01250
Os.9579.1.S1_at--319--6971Chr02:135421..135445 (25 bp)
GTAGCTCGGCTCAAGTTTTCATAGG
LOC_Os02g01250
Os.9579.1.S1_at--461--7371Chr02:135367..135391 (25 bp)
GTGACTCTTGACTTGTTTCGTTATT
LOC_Os02g01250
Os.9579.1.S1_at--1103--6791Chr02:135348..135372 (25 bp)
GTTATTAATCCACTGTACCCTGCTG
LOC_Os02g01250
Os.9579.1.S1_at--138--4291Chr02:135330..135354 (25 bp)
CCTGCTGCCCGTTGATATGAATGAA
LOC_Os02g01250
Target Sequence 
ATGATCATACCCGACATGCTCAAGAACGCCCCCATGTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTAT
TGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTG
GTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTT
GTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTG
CCTGTGTGCAGAATGGATGGATGCATGCCGGTGGTGTTAACTCGTAAGCATGATGTATTGCAGCGAACTTTAGTAGCTCG
GCTCAAGTTTTCATAGGTGGGGCAGCGTTTTCATGTATGTAGACTAGTGACTCTTGACTTGTTTCGTTATTAATCCACTG
TACCCTGCTGCCCGTTGATATGAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis