Browse Element(s) Details


Os.47747.1.S1_at

Description gb:AK122073.1
DB_XREF= gi:37991719
TID=Os.47747.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117P11, full insert sequence.
FL= gb:AK122073.1 gb:AK059054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0123011/11Ribosomal protein S5, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47747.1.S1_at--1139--8351Chr02:127579..127603 (25 bp)
GGCGGACCGTGGTTGAGTCATACTT
LOC_Os02g01230
Os.47747.1.S1_at--553--7131Chr02:127548..127572 (25 bp)
GTCATCAATTTGTTTGTCCTGTGGA
LOC_Os02g01230
Os.47747.1.S1_at--95--1791Chr02:127467..127491 (25 bp)
ACCGTGTGATGTGTGGTCTTCATTT
LOC_Os02g01230
Os.47747.1.S1_at--173--6291Chr02:127437..127461 (25 bp)
GATGTTGGTTTCTCTACACTTTGCC
LOC_Os02g01230
Os.47747.1.S1_at--561--371Chr02:127360..127384 (25 bp)
ATCAATGCTTTAGTGCCAACGGCGC
LOC_Os02g01230
Os.47747.1.S1_at--781--6551Chr02:127294..127318 (25 bp)
GATTCTTGCATAAGGTGGCCTGCCC
LOC_Os02g01230
Os.47747.1.S1_at--735--9031Chr02:127274..127298 (25 bp)
TGCCCCTTTGGTATGAGTCGTTCGT
LOC_Os02g01230
Os.47747.1.S1_at--819--4451Chr02:127226..127250 (25 bp)
GCCTCACGCCTACTGTTATGGTGGA
LOC_Os02g01230
Os.47747.1.S1_at--249--2631Chr02:127195..127219 (25 bp)
AACCGGCCACAATATGCTGATTTAG
LOC_Os02g01230
Os.47747.1.S1_at--199--9611Chr02:127124..127148 (25 bp)
TCATCCCGGAGATTTGCAGACGCAT
LOC_Os02g01230
Os.47747.1.S1_at--1106--3411Chr02:127108..127132 (25 bp)
CAGACGCATCGTGCATTGCATGCAT
LOC_Os02g01230
Target Sequence 
GGCGGACCGTGGTTGAGTCATACTTATTGTAGTCATCAATTTGTTTGTCCTGTGGAGCTCGNCATCTGGCTGTGGCGATG
GACGTCCAAAGAAAGAGCTAATTGCACATCTAACCGTGTGATGTGTGGTCTTCATTTGTTTGGATGTTGGTTTCTCTACA
CTTTGCCCTGCAACCGGCAGTCTGAGATGTGAGACTGTAATTTTTGAGGTGATCGATCAATCAATGCTTTAGTGCCAACG
GCGCAGCACATAGCAGATGGCAAGAGAAGCAAACGTTTGATTGATGATTCTTGCATAAGGTGGCCTGCCCCTTTGGTATG
AGTCGTTCGTTTGGATTTGTAACCAGAGGCTCTGCCTCACGCCTACTGTTATGGTGGATTGGCAAACCGGCCACAATATG
CTGATTTAGAGATAATAAAGTCCTTGAACATGTGTAGCTACTTGGTTGATTGATGTCATCCCGGAGATTTGCAGACGCAT
CGTGCATTGCATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis