Browse Element(s) Details


Os.51105.1.S1_at

Description gb:AK060685.1
DB_XREF= gi:32970703
TID=Os.51105.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G03, full insert sequence.
FL= gb:AK060685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0121011/11amino acid transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51105.1.S1_at--1029--2111Chr02:121084..121108 (25 bp)
ACATGGCGATCGTGGTACACCTGGT
LOC_Os02g01210
Os.51105.1.S1_at--679--3491Chr02:121085..121109 (25 bp)
CATGGCGATCGTGGTACACCTGGTG
LOC_Os02g01210
Os.51105.1.S1_at--767--8471Chr02:121087..121111 (25 bp)
TGGCGATCGTGGTACACCTGGTGGG
LOC_Os02g01210
Os.51105.1.S1_at--716--9571Chr02:121138..121162 (25 bp)
TCTTCGCCTTCGTGGAGAGGAGGGC
LOC_Os02g01210
Os.51105.1.S1_at--392--1051Chr02:121219..121243 (25 bp)
AGGTGAGCGTGTTCAGGTTGGCGTG
LOC_Os02g01210
Os.51105.1.S1_at--202--4671Chr02:121225..121249 (25 bp)
GCGTGTTCAGGTTGGCGTGGCGGAC
LOC_Os02g01210
Os.51105.1.S1_at--457--3991Chr02:121240..121264 (25 bp)
CGTGGCGGACGTGCTTCGTGGCGGT
LOC_Os02g01210
Os.51105.1.S1_at--926--10491Chr02:121296..121320 (25 bp)
TTCAACGACGTGGTGGGCATCCTGG
LOC_Os02g01210
Os.51105.1.S1_at--1133--991Chr02:121658..121682 (25 bp)
AGGTTGGGCTAGACACGGTTCATCC
LOC_Os02g01210
Os.51105.1.S1_at--1004--7811Chr02:121659..121683 (25 bp)
GGTTGGGCTAGACACGGTTCATCCA
LOC_Os02g01210
Os.51105.1.S1_at--606--6611Chr02:121660..121684 (25 bp)
GTTGGGCTAGACACGGTTCATCCAC
LOC_Os02g01210
Target Sequence 
ACATGGCGATCGTGGTACACCTGGTGGGGGCGTACCAGGTGTACTGCCAGCCGCTCTTCGCCTTCGTGGAGAGGAGGGCG
GAGCGGCGGTGGCCCAACGGCCTCCCCGGCGGCGACTACGACCTGGGGTGGATAAAGGTGAGCGTGTTCAGGTTGGCGTG
GCGGACGTGCTTCGTGGCGGTGACGACGGTGGTGGCGATGCTGCTGCCCTTCTTCAACGACGTGGTGGGCATCCTGGGGG
CGCTCGGCTTCTGGCCGCTCACCGTCTACTTCCCCGTCGAGATGTACATCGCCCACCGCCGCATCCGGAGGTGGACAACC
ACCTGGGTCGGCCTGCAGGCGCTCAGCCTCGCCTGCCTTCTCGTCTCGCTCGCCGCCGCCGTCGGCTCCATCGCCGGCGT
CCTGCTCGACCTCAAGTCCTACCGTCCATTCCGCTCCACCTACTAATTAACGATCGATGATTGTGCTACTAGAAAGGAAA
TAGGTATCCGATGTATCATGAGCTTGGGCTGGCCATAACGATGCAATATTAATAAGGCCTCAACCCACAAGATGCAACGA
TGGTTTCAATTATAAGGTTGGGCTAGACACGGTTCATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis