Browse Element(s) Details


OsAffx.11856.1.S1_x_at

Description tigr:9630.m00019
TID=OsAffx.11856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0117011/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016567biological_processprotein ubiquitination
GO:0042023biological_processDNA endoreduplication
GO:0000151cellular_componentubiquitin ligase complex
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11856.1.S1_x_at--619--4251Chr02:88404..88428 (25 bp)
CCGTGGCACTCCTATCGAAGATTTG
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--1046--6531Chr02:88373..88397 (25 bp)
GATTTTACTCTTCCAGGTTATCCTG
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--249--9911Chr02:88033..88252 (25 bp)
TACTCTGTTTTGCAGGTCTTTGACA
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--1151--7131Chr02:88018..88042 (25 bp)
GTCTTTGACATCTCATCCCTGAAAA
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--1088--6031Chr02:87691..87715 (25 bp)
GAGATCATGGCTGAATTCACCCCAG
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--602--5951Chr02:87667..87691 (25 bp)
GAGCAACAACATGCATTCTGCCAGT
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--237--1211Chr02:87645..87669 (25 bp)
AGTTTGTAACTGGTGCTCCTCGGCT
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--520--4471Chr02:87617..87641 (25 bp)
GCCTGGTGGTTTAGCTGCCCTTAAT
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--1108--9151Chr02:87602..87626 (25 bp)
TGCCCTTAATCCCAAGCTTACTATA
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--208--10431Chr02:87382..87406 (25 bp)
TTATCTTAAATTGCCTCCATACTCC
LOC_Os02g01170
OsAffx.11856.1.S1_x_at--1068--3291Chr02:87358..87382 (25 bp)
CACAAAAGTACGGTTTCTTTCTCTG
LOC_Os02g01170
Target Sequence 
CCGTGGCACTCCTATCGAAGATTTGTGTTTAGATTTTACTCTTCCAGGTTATCCTGATTATATTCTTAAAGAAGGCGAGG
AAAACACAATTTATTACTCTGTTTTGCAGGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
CTAATATGTGGTCGCCGAGAAATTTGGGAGCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAA
AAGTCCTGCAATTGTAAATCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCCAGTTTGTAA
CTGGTGCTCCTCGGCTTCCGCCTGGTGGTTTAGCTGCCCTTAATCCCAAGCTTACTATAGTTAGGAAGCACCCCTCAAGT
GCGGTGAATACTTCAAATATCGCTGGAGTTACAGAGTCTGCAGATGATGATCTGCCAAGTGTTATGACATGTGCTAATTA
TCTTAAATTGCCTCCATACTCCACAAAAGTACGGTTTCTTTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11856.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis