Browse Element(s) Details


Os.24513.1.A1_at

Description gb:AK068038.1
DB_XREF= gi:32978056
TID=Os.24513.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129P11, full insert sequence.
FL= gb:AK068038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0111011/11Translation initiation factor IF-3, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24513.1.A1_at--146--671Chr02:64116..64140 (25 bp)
ATGAATCATCCTGCTGAATCAGCGG
LOC_Os02g01110
Os.24513.1.A1_at--1155--9751Chr02:64142..64166 (25 bp)
TAATGGTGCAGGCTATCCTACTCCG
LOC_Os02g01110
Os.24513.1.A1_at--691--8111Chr02:64243..64267 (25 bp)
GGACTGCTAATTCTGATGTACCTAA
LOC_Os02g01110
Os.24513.1.A1_at--887--831Chr02:64273..64297 (25 bp)
ATGGAATCTTTAGTTCTCCTAGAAG
LOC_Os02g01110
Os.24513.1.A1_at--420--7071Chr02:64409..64433 (25 bp)
GTAAGGATCAGCATGTGGGTCTCAT
LOC_Os02g01110
Os.24513.1.A1_at--6--5711Chr02:64456..64480 (25 bp)
GACTATTATTCATTCAGCCTGAGCA
LOC_Os02g01110
Os.24513.1.A1_at--283--7851Chr02:64529..64553 (25 bp)
GGTACTGTACTACTCCTATTTGTTA
LOC_Os02g01110
Os.24513.1.A1_at--896--10771Chr02:64548..64572 (25 bp)
TTGTTAAGTAGCTTTTGGGTCCACT
LOC_Os02g01110
Os.24513.1.A1_at--909--10811Chr02:64562..64586 (25 bp)
TTGGGTCCACTTGTATTGTTATCAT
LOC_Os02g01110
Os.24513.1.A1_at--937--5211Chr02:64618..64642 (25 bp)
GAATAGCCCTTTTACTTGTCAGGTT
LOC_Os02g01110
Os.24513.1.A1_at--361--351Chr02:64659..64683 (25 bp)
ATAATGTCATGAGTGGTCGGATCCA
LOC_Os02g01110
Target Sequence 
ATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTAC
CAGAAAACCTGCTACGTNTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATG
GAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGC
AGGTNTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGT
TTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATNTACGTGGCGGTGGCACGGTGAGAAAGCCAAC
TGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGA
AGAATCACACCTGTTTAGNCTAGAATAGCCCTTTTACTTGTCAGGTTGATCGAATAGTGAAAAATAATGTCATGAGTGGT
CGGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24513.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis