Browse Element(s) Details


OsAffx.24047.1.S1_at

Description tigr:9630.m00009
TID=OsAffx.24047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0109011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01040OsAffx.24046.5.S1_x_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.5.S1_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.7.S1_x_at5/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.3.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.2.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040Os.43764.1.A1_at1/112+22133..24960hypothetical protein
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009934biological_processregulation of meristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0048441biological_processpetal development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24047.1.S1_at--978--911Chr02:48822..48846 (25 bp)
AGGCATGGAGACAGCAGCAGCTGAT
LOC_Os02g01090
OsAffx.24047.1.S1_at--904--2931Chr02:48784..48808 (25 bp)
AAGGCGAGGTCGTACCCTTGCGGCT
LOC_Os02g01090
OsAffx.24047.1.S1_at--269--4071Chr02:48780..48804 (25 bp)
CGAGGTCGTACCCTTGCGGCTTCTG
LOC_Os02g01090
OsAffx.24047.1.S1_at--341--7791Chr02:48777..48801 (25 bp)
GGTCGTACCCTTGCGGCTTCTGCAG
LOC_Os02g01090
OsAffx.24047.1.S1_at--183--2591Chr02:48712..48736 (25 bp)
AACGTCCATCGGAGGGACAGAGCCA
LOC_Os02g01090
OsAffx.24047.1.S1_at--947--9231Chr02:48708..48732 (25 bp)
TCCATCGGAGGGACAGAGCCAGGCT
LOC_Os02g01090
OsAffx.24047.1.S1_at--292--7631Chr02:48699..48723 (25 bp)
GGGACAGAGCCAGGCTCAGGCTCAC
LOC_Os02g01090
OsAffx.24047.1.S1_at--1122--911Chr02:48682..48706 (25 bp)
AGGCTCACCCATCAACCTGATGCAG
LOC_Os02g01090
OsAffx.24047.1.S1_at--921--371Chr02:48672..48696 (25 bp)
ATCAACCTGATGCAGCTCTGATCGC
LOC_Os02g01090
OsAffx.24047.1.S1_at--139--2631Chr02:48669..48693 (25 bp)
AACCTGATGCAGCTCTGATCGCCTC
LOC_Os02g01090
OsAffx.24047.1.S1_at--1023--9251Chr02:48590..48614 (25 bp)
TCCTCCACACGACGGTGCCAGCAGC
LOC_Os02g01090
Target Sequence 
AGGCATGGAGACAGCAGCAGCTGATCCTGCAGGCGAAGAAGGCGAGGTCGTACCCTTGCGGCTTCTGCAGGAGGGAGTTC
CGGTCGGCGCAGGCCCTCGGCGGCCACATGAACGTCCATCGGAGGGACAGAGCCAGGCTCAGGCTCACCCATCAACCTGA
TGCAGCTCTGATCGCCTCCCCCTCCACCAAGTCGACGCCGCCTCTTCTTCCCAACCTCAACTACCCTCCTCCTCCTCCAC
ACGACGGTGCCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis