Browse Element(s) Details


Os.52725.1.S1_at

Description gb:AK070106.1
DB_XREF= gi:32980130
TID=Os.52725.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044K08, full insert sequence.
FL= gb:AK070106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0107011/11FG-GAP repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01020Os.20689.1.S1_at11/112+9286..13896expressed protein
LOC_Os02g01030Os.11705.1.S1_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01030OsAffx.11854.1.S1_x_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01040OsAffx.24046.5.S1_x_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.5.S1_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.7.S1_x_at5/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.3.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.2.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040Os.43764.1.A1_at1/112+22133..24960hypothetical protein
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007160biological_processcell-matrix adhesion
GO:0008305cellular_componentintegrin complex
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52725.1.S1_at--586--9551Chr02:37090..37114 (25 bp)
TCTTACGCACTAGCATGTTGACTGT
LOC_Os02g01070
Os.52725.1.S1_at--558--6931Chr02:37180..37204 (25 bp)
GTAGTGGTAACGTGCATGGGCCAAC
LOC_Os02g01070
Os.52725.1.S1_at--565--4391Chr02:37199..37223 (25 bp)
GCCAACGTAGGCACCAGGAGCAGGA
LOC_Os02g01070
Os.52725.1.S1_at--480--5931Chr02:37216..37240 (25 bp)
GAGCAGGAGCACTCGTGATTGCACG
LOC_Os02g01070
Os.52725.1.S1_at--717--9031Chr02:37235..37259 (25 bp)
TGCACGGCGCACAGAGCTACTCAAG
LOC_Os02g01070
Os.52725.1.S1_at--451--2791Chr02:37417..37441 (25 bp)
AAGAGTGGATTTGGTGTTCACCCAG
LOC_Os02g01070
Os.52725.1.S1_at--671--8971Chr02:37453..37477 (25 bp)
TGAAGATTTGCCCAGTAGGGCCTCC
LOC_Os02g01070
Os.52725.1.S1_at--507--4291Chr02:37473..37497 (25 bp)
CCTCCCTTACTCTCATTTCAAAATG
LOC_Os02g01070
Os.52725.1.S1_at--330--6911Chr02:37497..37521 (25 bp)
GTATCCTCTCAATTTATCTGCAAGT
LOC_Os02g01070
Os.52725.1.S1_at--977--6471Chr02:37536..37560 (25 bp)
GATACTGTATACTTTCCGATCCATT
LOC_Os02g01070
Os.52725.1.S1_at--767--4231Chr02:37551..37575 (25 bp)
CCGATCCATTTACTGTACTCTCAAA
LOC_Os02g01070
Target Sequence 
TCTTACGCACTAGCATGTTGACTGTGTTGTTCTTTTTGTGTTTGGTGTTTTGGGGAGGGGGGAGGGGGGAGGGGGAGTTG
CATGAACGCAGTAGTGGTAACGTGCATGGGCCAACGTAGGCACCAGGAGCAGGAGCACTCGTGATTGCACGGCGCACAGA
GCTACTCAAGATGGAGAGGATGGTGGCGTGGGGAGGGGAGAGGATAGGATTTGAAATGAGGCAGATCAGTGGAGGCAGTG
GTGCTGGCAGTTACTGGGCCAAGATGACATTGTAGGTGGTCGGGTAGAAGGAAAAAGAGAAGATGGCAGGGGCAGTCGAG
GGTTCTTAAGAGTGGATTTGGTGTTCACCCAGTAGGAAATGGGTGAAGATTTGCCCAGTAGGGCCTCCCTTACTCTCATT
TCAAAATGTATCCTCTCAATTTATCTGCAAGTGTGTTCGTCTTGAAGATACTGTATACTTTCCGATCCATTTACTGTACT
CTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis