Browse Element(s) Details


OsAffx.20303.1.S1_at

Description gb:NM_196699.1
DB_XREF= gi:37534757
TID=OsAffx.20303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0046P18.8), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3051011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g174209/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g010507/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g477301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20303.1.S1_at--52--7813Chr10:15538357..15538381 (25 bp)
GGTCTGTCAATTTCTACATAGTCCT
LOC_Os10g30510
OsAffx.20303.1.S1_at--951--1132Chr10:15538376..15538400 (25 bp)
AGTCCTACTACAGTGCATTGGTCAG
LOC_Os10g30510
OsAffx.20303.1.S1_at--50--6533Chr10:15538452..15538476 (25 bp)
GATTTGGTAAGTCTGATTCTATGCT
LOC_Os10g30510
OsAffx.20303.1.S1_at--836--10693Chr10:15538542..15538566 (25 bp)
TTGCAGTTTTCTTGGGTCCTAACTT
LOC_Os10g30510
OsAffx.20303.1.S1_at--7--7273Chr10:15538557..15538581 (25 bp)
GTCCTAACTTAATTTCTTGGAGTGC
LOC_Os10g30510
OsAffx.20303.1.S1_at--259--6114Chr10:15538576..15538600 (25 bp)
GAGTGCTAGAAAACAGGCTACGGTT
LOC_Os10g30510
OsAffx.20303.1.S1_at--894--2951Chr10:15538628..15538652 (25 bp)
AAGGCCTTAGCTAATGCTACGACAG
LOC_Os10g30510
OsAffx.20303.1.S1_at--751--8893Chr10:15538686..15538710 (25 bp)
TGAGAATTGCAAGACCTTCGGTAGC
LOC_Os10g30510
OsAffx.20303.1.S1_at--54--2753Chr10:15538696..15538720 (25 bp)
AAGACCTTCGGTAGCACAATTGTGG
LOC_Os10g30510
OsAffx.20303.1.S1_at--894--391Chr10:15538860..15538884 (25 bp)
ATCAGCTAGCTGATGGTTTCACTAA
LOC_Os10g30510
OsAffx.20303.1.S1_at--492--6252Chr10:15538871..15538895 (25 bp)
GATGGTTTCACTAAATCCCTGCCGG
LOC_Os10g30510
Target Sequence 
GGTCTGTCAATTTCTACATAGTCCTACTACAGTGCATTGGTCAGCAGTAAAACGAATTTTAAGGTATATAAAAGGGACTG
TGGAATTTGGACTTAGATTTGGTAAGTCTGATTCTATGCTTATTAGTGCTTTTTCTGATGCTGACTGGGCTGGTTGTTCT
GATGATAGAAGATCTACAGGAGGTTTTGCAGTTTTCTTGGGTCCTAACTTAATTTCTTGGAGTGCTAGAAAACAGGCTAC
GGTTTCTAGATCTAGTACTGAAGCAGAGTATAAGGCCTTAGCTAATGCTACGACAGAAGTTACGTGGGTAAGGAAAATTT
TGGATGAATTGAGAATTGCAAGACCTTCGGTAGCACAATTGTGGTGTGATAATTTGGGAGCTACTTATTTATCAGCTAAT
CCAGTCTTTCATGCAAGGACAAAGCACATTGAGATTGATTATCATTTTGTGAGAGAGCAAGTTGCGAAGAAGCTACTTGA
TATACAATTTATATCTACAACAGATCAGCTAGCTGATGGTTTCACTAAATCCCTGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis