Browse Element(s) Details


Os.46882.1.S1_at

Description gb:AK105860.1
DB_XREF= gi:32991069
TID=Os.46882.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0046P18.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H11, full insert sequence.
FL= gb:AK105860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3053011/11lectin protein kinase, putative, expressed
LOC_Os06g142602/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46882.1.S1_at--683--6692Chr10:15546592..15546616 (25 bp)
GTTCGGGTCGTTCGTCCTGGAGGTG
LOC_Os10g30530
Os.46882.1.S1_at--724--9351Chr10:15546705..15546729 (25 bp)
TCGACCGGTGGCACAAGGGCGACAT
LOC_Os10g30530
Os.46882.1.S1_at--839--1672Chr10:15546888..15546912 (25 bp)
AGCCGGAGCCCACGTACCGGAGCTT
LOC_Os10g30530
Os.46882.1.S1_at--766--4911Chr10:15546945..15546969 (25 bp)
GCTTCGACTCATGCGCCGTGTCGTA
LOC_Os10g30530
Os.46882.1.S1_at--580--9611Chr10:15546953..15546977 (25 bp)
TCATGCGCCGTGTCGTACCCGTCGA
LOC_Os10g30530
Os.46882.1.S1_at--453--4691Chr10:15547017..15547041 (25 bp)
GCGGACGGTGATGGATCGAACACCA
LOC_Os10g30530
Os.46882.1.S1_at--864--9351Chr10:15547032..15547056 (25 bp)
TCGAACACCAATACTAACTGACCCT
LOC_Os10g30530
Os.46882.1.S1_at--801--9891Chr10:15547043..15547067 (25 bp)
TACTAACTGACCCTCCTTAGAAACA
LOC_Os10g30530
Os.46882.1.S1_at--1089--5791Chr10:15547051..15547075 (25 bp)
GACCCTCCTTAGAAACAGTCAAGTT
LOC_Os10g30530
Os.46882.1.S1_at--1139--8171Chr10:15547087..15547111 (25 bp)
GGAACCTAGAAATTTCATTTCATCA
LOC_Os10g30530
Os.46882.1.S1_at--10--2191Chr10:15547142..15547166 (25 bp)
ACACATTCTAATCAGTATGTTTCTG
LOC_Os10g30530
Target Sequence 
GTTCGGGTCGTTCGTCCTGGAGGTGGCGTGCGGGCGGCGGCCGATCGAGCGCGGCGGCGCCATGACCGCCGCCGCCGACG
AGGACGGCCAGCTCGTGCTCGCCGACTGGGTGCTCGACCGGTGGCACAAGGGCGACATCGCCGCCGCGGCGGACGCGCGG
CTGTGCGGCGACTACGACGCCAAGGAGGCGGCGCTGGTGCTCAAGCTGGGACTCCTCTGCTCCCACCCGGTGGCCGCCGC
GAGGCCGACGATGCGGCAGGTGGTGCACTTCCTCGACGGCGACGCGCCGCTGCCGGAGCCGGAGCCCACGTACCGGAGCT
TCACCACGCTGGCCATGATGCAGAACGCCGACGGCTTCGACTCATGCGCCGTGTCGTACCCGTCGACGGCGACGAGCATC
GACGGCGCGTCCTCCGTCCTCTCCGGCGGACGGTGATGGATCGAACACCAATACTAACTGACCCTCCTTAGAAACAGTCA
AGTTACAAACATTTTGGAACCTAGAAATTTCATTTCATCATTTGTAAACTTTCAAAACATGTACATTCAAACACATTCTA
ATCAGTATGTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis