Browse Element(s) Details


OsAffx.15098.1.S1_at

Description tigr:9633.m04111
TID=OsAffx.15098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4409011/11uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os10g305401/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15098.1.S1_at--833--5611Chr05:25553164..25553188 (25 bp)
GACACCGTCAGACACCGACGCCGGG
LOC_Os05g44090
OsAffx.15098.1.S1_at--1000--9391Chr05:25553061..25553085 (25 bp)
TCGTTCTCCGTGTCCGGGAGGATGC
LOC_Os05g44090
OsAffx.15098.1.S1_at--901--6351Chr05:25553041..25553065 (25 bp)
GATGCCGGCGGTCCGGATACGGCCA
LOC_Os05g44090
OsAffx.15098.1.S1_at--1062--4692Chr10:15549481..15549534 (23 bp)
GCGGCTGCTGGCGTGCTACCTCGCC
LOC_Os10g30540
OsAffx.15098.1.S1_at--246--8811Chr05:25552808..25552832 (25 bp)
TGTTCCGCCAGGTCTGGTTCGAGTA
LOC_Os05g44090
OsAffx.15098.1.S1_at--551--4171Chr05:25552803..25552827 (25 bp)
CGCCAGGTCTGGTTCGAGTACATCA
LOC_Os05g44090
OsAffx.15098.1.S1_at--1083--4411Chr05:25552802..25552826 (25 bp)
GCCAGGTCTGGTTCGAGTACATCAA
LOC_Os05g44090
OsAffx.15098.1.S1_at--406--4351Chr05:25552801..25552825 (25 bp)
CCAGGTCTGGTTCGAGTACATCAAC
LOC_Os05g44090
OsAffx.15098.1.S1_at--365--7811Chr05:25552798..25552822 (25 bp)
GGTCTGGTTCGAGTACATCAACCTC
LOC_Os05g44090
OsAffx.15098.1.S1_at--518--9431Chr05:25552796..25552820 (25 bp)
TCTGGTTCGAGTACATCAACCTCCA
LOC_Os05g44090
OsAffx.15098.1.S1_at--1143--8551Chr05:25552794..25552818 (25 bp)
TGGTTCGAGTACATCAACCTCCACC
LOC_Os05g44090
Target Sequence 
GACACCGTCAGACACCGACGCCGGGGCCAAGCTGCGGACGCGACGCCACCGGCGCCGCGCGCACCGCCGCCGCCGCAGCA
GCCTGGGCGGGAGCGGCAGGCGGTCGTTCTCCGTGTCCGGGAGGATGCCGGCGGTCCGGATACGGCCACCGCGCGCGGCC
GCCTCGGCGCCGGAGCTGGAGAGGCTGGCGGTGGTGCGGCGCACGCGCGACCCGCAGCGGGCGTTCCGGGAGTCGATGGT
GGAGATGATCGCGAGCAGCGGCGGGAGCATCGCGGCGCGGCCGGAGGAGCTGGAGCGGCTGCTGGCGTGCTACCTCGCCC
TCAACGCCGACGAGCACCACGACTGCATCGTCAAGGTGTTCCGCCAGGTCTGGTTCGAGTACATCAACCTCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis