Browse Element(s) Details


Os.8735.1.S1_at

Description gb:AK072066.1
DB_XREF= gi:32982089
TID=Os.8735.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110H22, full insert sequence.
FL= gb:AK072066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4410011/11Trehalose synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8735.1.S1_at--168--2851Chr05:25562684..25562708 (25 bp)
AAGTCGAATTCTTGGGTTCATGATT
LOC_Os05g44100
Os.8735.1.S1_at--154--6551Chr05:25562776..25562800 (25 bp)
GATTACAGTTTGAGTAGCTCCCAAA
LOC_Os05g44100
Os.8735.1.S1_at--18--3811Chr05:25562793..25562817 (25 bp)
CTCCCAAATAGCCTCATTATGCGTT
LOC_Os05g44100
Os.8735.1.S1_at--355--8731Chr05:25562819..25562843 (25 bp)
TGTTACGGCGGCATTTACTACCAGT
LOC_Os05g44100
Os.8735.1.S1_at--1072--9851Chr05:25562834..25562858 (25 bp)
TACTACCAGTCGCTGCTACGAAGAT
LOC_Os05g44100
Os.8735.1.S1_at--581--10431Chr05:25562861..25562885 (25 bp)
TTATGTTCATAGCTGACCTGCCATG
LOC_Os05g44100
Os.8735.1.S1_at--1118--1751Chr05:25562876..25562900 (25 bp)
ACCTGCCATGTTCTTTCCATTTGAA
LOC_Os05g44100
Os.8735.1.S1_at--476--7891Chr05:25562989..25563013 (25 bp)
GGTTAACTGCAGCTTGTGATTTCTT
LOC_Os05g44100
Os.8735.1.S1_at--255--6531Chr05:25563006..25563030 (25 bp)
GATTTCTTGCTTGTTAACCTGGTTA
LOC_Os05g44100
Os.8735.1.S1_at--852--7391Chr05:25563060..25563084 (25 bp)
GTGATGCTTTTCGTTTACTTGTAAT
LOC_Os05g44100
Os.8735.1.S1_at--231--3411Chr05:25563126..25563150 (25 bp)
CAGCATTATCTGTATCATCCTTATA
LOC_Os05g44100
Target Sequence 
AAGTCGAATTCTTGGGTTCATGATTCATTTTGGTGAAGATGAGGGTAAGGGATTAAAACATGTAGCTGCAAATATTCTGA
AGTCCGGAAAGAGATTACAGTTTGAGTAGCTCCCAAATAGCCTCATTATGCGTTTTGTTACGGCGGCATTTACTACCAGT
CGCTGCTACGAAGATTCTTATGTTCATAGCTGACCTGCCATGTTCTTTCCATTTGAATACTTATCCCAAGGCTAAGTAGG
AAGCATCGGCGTGGCAGAAGTGCATCGGTGCAATATGGGGGAATATGAGGGTAAATCTTGTGACAGGTTAACTGCAGCTT
GTGATTTCTTGCTTGTTAACCTGGTTAACAGAAATCGTCTAGTAGGGAAAAAACTAGTGATGCTTTTCGTTTACTTGTAA
TGTTGTGGCANTGTGGAGNATGACATTTGATTCATTGTTTGACAGCATTATCTGTATCATCCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis