Browse Element(s) Details


Os.17189.1.S1_at

Description gb:AK060246.1
DB_XREF= gi:32970264
TID=Os.17189.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H10, full insert sequence.
FL= gb:AK060246.1 gb:AK061969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4407011/11Ras-related protein RIC2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44000NANA5+25514674..25518118retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44010NANA5+25518435..25521378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44020Os.52467.1.S1_at11/115+25525086..25527617expressed protein
LOC_Os05g44020Os.52467.1.S1_x_at11/115+25525086..25527617expressed protein
LOC_Os05g44020OsAffx.15097.1.S1_at1/115+25525086..25527617expressed protein
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17189.1.S1_at--559--7691Chr05:25542084..25542108 (25 bp)
GGGTATACTGTAATAGATCTATTCA
LOC_Os05g44070
Os.17189.1.S1_at--1067--6411Chr05:25542069..25542093 (25 bp)
GATCTATTCAATTGTCTCATTTCTG
LOC_Os05g44070
Os.17189.1.S1_at--843--3171Chr05:25542060..25542084 (25 bp)
AATTGTCTCATTTCTGGTGTTGTTA
LOC_Os05g44070
Os.17189.1.S1_at--124--3591Chr05:25542052..25542076 (25 bp)
CATTTCTGGTGTTGTTATTGAGGGT
LOC_Os05g44070
Os.17189.1.S1_at--297--8351Chr05:25542034..25542058 (25 bp)
TGAGGGTTAGGGTGATCCAACTATC
LOC_Os05g44070
Os.17189.1.S1_at--739--7711Chr05:25542025..25542049 (25 bp)
GGGTGATCCAACTATCATTCAAACT
LOC_Os05g44070
Os.17189.1.S1_at--1101--10491Chr05:25542008..25542032 (25 bp)
TTCAAACTATCAGTTCTTGATTTGC
LOC_Os05g44070
Os.17189.1.S1_at--1077--10711Chr05:25541987..25542011 (25 bp)
TTGCTCTTTGTATCAAACTGATCAT
LOC_Os05g44070
Os.17189.1.S1_at--249--3292Chr10:14312332..14312351 (20 bp)
CAAACTGATCATGGTGTTGTTATCT
NONE
Os.17189.1.S1_at--615--7751Chr05:25541962..25541986 (25 bp)
GGTGTTGTTATCTATCACTGCAATG
LOC_Os05g44070
Os.17189.1.S1_at--71--8791Chr05:25541957..25541981 (25 bp)
TGTTATCTATCACTGCAATGCAAGT
LOC_Os05g44070
Target Sequence 
GGGTATACTGTAATAGATCTATTCAATTGTCTCATTTCTGGTGTTGTTATTGAGGGTTAGGGTGATCCAACTATCATTCA
AACTATCAGTTCTTGATTTGCTCTTTGTATCAAACTGATCATGGTGTTGTTATCTATCACTGCAATGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis