Browse Element(s) Details


OsAffx.15097.1.S1_at

Description tigr:9633.m04103
TID=OsAffx.15097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g440201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43970Os.53554.1.S1_at11/115+25498862..25503369expressed protein
LOC_Os05g43980NANA5+25506325..25507085hypothetical protein
LOC_Os05g43990NANA5+25508699..25512244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44000NANA5+25514674..25518118retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44010NANA5+25518435..25521378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44020Os.52467.1.S1_at11/115+25525086..25527617expressed protein
LOC_Os05g44020Os.52467.1.S1_x_at11/115+25525086..25527617expressed protein
LOC_Os05g44020OsAffx.15097.1.S1_at1/115+25525086..25527617expressed protein
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15097.1.S1_at--1032--7191Chr05:25526308..25526327 (20 bp)
GTCGTGGTACATCCGTCACTACAGA
LOC_Os05g44020
OsAffx.15097.1.S1_at--922--3511Chr05:25528103..25528127 (25 bp)
CATGAACACGCTTCATCTGAATCTC
NONE
OsAffx.15097.1.S1_at--797--9471Chr05:25528118..25528142 (25 bp)
TCTGAATCTCTTGTGTTTAGCTGCA
NONE
OsAffx.15097.1.S1_at--680--5191Chr05:25528140..25528575 (25 bp)
GCAATCTGCAGGCAAATGCTTTCTC
NONE
OsAffx.15097.1.S1_at--99--10591Chr05:25528571..25528595 (25 bp)
TTCTCATCAAGCTTATGCGTTGCCG
NONE
OsAffx.15097.1.S1_at--91--10131Chr05:25528584..25528608 (25 bp)
TATGCGTTGCCGTAACCGTAAACAT
NONE
OsAffx.15097.1.S1_at--459--2091Chr05:25528605..25528629 (25 bp)
ACATAGCTTTTTGCGTTGCCGTAAA
NONE
OsAffx.15097.1.S1_at--863--2071Chr05:25528629..25528653 (25 bp)
ACATTGACTTGTTAGGCCGACCAGA
NONE
OsAffx.15097.1.S1_at--750--891Chr05:25528642..25528666 (25 bp)
AGGCCGACCAGAGTCACAGATGGAT
NONE
OsAffx.15097.1.S1_at--145--8291Chr05:25528667..25528691 (25 bp)
GGCATCATGGCAGTATGGCACCTCA
NONE
OsAffx.15097.1.S1_at--782--8251Chr05:25528683..25528707 (25 bp)
GGCACCTCACAATCAGTACACGATA
NONE
Target Sequence 
GTCGTGGTACATCCGTCACTACAGAGGAGAGGTATAGGCCGACAAATTGTTGAGAGAATGACAAGAGTACTCCATAACAG
AGGTATATTTGACATTTCCGCACTATGTACAGAAAAGGAGAGATACCTGGTGAAGCAAGACAAAAGGATTGCCTTCAAAA
TTCATGAACACGCTTCATCTGAATCTCTTGTGTTTAGCTGCAATCTGCAGGCAAATGCTTTCTCATCAAGCTTATGCGTT
GCCGTAACCGTAAACATAGCTTTTTGCGTTGCCGTAAACATTGACTTGTTAGGCCGACCAGAGTCACAGATGGATGGCAT
CATGGCAGTATGGCACCTCACAATCAGTACACGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis