Browse Element(s) Details


Os.52467.1.S1_x_at

Description gb:AK067311.1
DB_XREF= gi:32977329
TID=Os.52467.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099I21, full insert sequence.
FL= gb:AK067311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4402011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43970Os.53554.1.S1_at11/115+25498862..25503369expressed protein
LOC_Os05g43980NANA5+25506325..25507085hypothetical protein
LOC_Os05g43990NANA5+25508699..25512244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44000NANA5+25514674..25518118retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44010NANA5+25518435..25521378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44020Os.52467.1.S1_at11/115+25525086..25527617expressed protein
LOC_Os05g44020Os.52467.1.S1_x_at11/115+25525086..25527617expressed protein
LOC_Os05g44020OsAffx.15097.1.S1_at1/115+25525086..25527617expressed protein
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52467.1.S1_x_at--911--6151Chr05:25526331..25526355 (25 bp)
GAGGTATAGGCCGACAAATTGTTGA
LOC_Os05g44020
Os.52467.1.S1_x_at--1011--3411Chr05:25526962..25526986 (25 bp)
CAGAGGTATATTTGACATTTCCGCA
LOC_Os05g44020
Os.52467.1.S1_x_at--572--951Chr05:25527000..25527182 (25 bp)
AGGAGAGGCCCTTTTTTGAAGCATG
LOC_Os05g44020
Os.52467.1.S1_x_at--507--8411Chr05:25527164..25527188 (25 bp)
GGCCCTTTTTTGAAGCATGTGGATT
LOC_Os05g44020
Os.52467.1.S1_x_at--146--6331Chr05:25527196..25527220 (25 bp)
GATGCAATGGGTTCAACAACAATGA
LOC_Os05g44020
Os.52467.1.S1_x_at--97--4231Chr05:25527326..25527350 (25 bp)
CCAGTAAAGGAACAGCAGCCGGAGT
LOC_Os05g44020
Os.52467.1.S1_x_at--131--2151Chr05:25527337..25527361 (25 bp)
ACAGCAGCCGGAGTAAATTATGCAA
LOC_Os05g44020
Os.52467.1.S1_x_at--531--4491Chr05:25527343..25527367 (25 bp)
GCCGGAGTAAATTATGCAATCCTTT
LOC_Os05g44020
Os.52467.1.S1_x_at--206--3691Chr05:25527505..25527529 (25 bp)
CTTTGAGATGAGTGCTAAGATTTCA
LOC_Os05g44020
Os.52467.1.S1_x_at--1046--2451Chr05:25527569..25527593 (25 bp)
AACAAGTTATTGAATCTGCAGTGGA
LOC_Os05g44020
Os.52467.1.S1_x_at--161--5031Chr05:25527586..25527610 (25 bp)
GCAGTGGAAATAGCAATTATCCTTC
LOC_Os05g44020
Target Sequence 
GAGGTATAGGCCGACAAATTGTTGAGAGAATGACAANAGTACTCCATANCAGAGGTATATTTGACATTTCCGCANTATGT
ACAGAAAAGGAGAGGCCCTTTTTTGAAGCATGTGGATTTGGGGANGATGCAATGGGTTCAACAACAATGATGTNCNCGGG
AAAGATGCNCAGATAGNACNCAATGATAATTNTNTCAAGGAAGATATTGACAGCTCNTNTGGNGGGTTAACAGTTGNTGC
TTGAATATATCNCTNCCAGTAAAGGAACAGCAGCCGGAGTAAATTATGCAATCCTTTNTAGCTGGTTAGAAGNGAAAATA
NCCAGAAGGATATGGCAAAANTCATAGCATANTAGTATTTGTGAAGGATAGCAGTACATNCCATGTTTGATNCCCCAGAC
CAGCATCTGTATACTNTNCCACTGANNGTAAAAACTTTGAGATGAGTGCTAAGATTTCATTTNCAANCAAAGAATGAAGG
AAGGAAACAAATACATCAAACAAGTTATTGAATCTGCAGTGGAAATAGCAATTATCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52467.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis