Browse Element(s) Details


OsAffx.27298.1.S1_at

Description tigr:9633.m04113
TID=OsAffx.27298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4411011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27298.1.S1_at--1090--2751Chr05:25565386..25565410 (25 bp)
AAGACGCAGCGACCGTGGTTCCCCG
LOC_Os05g44110
OsAffx.27298.1.S1_at--1058--5311Chr05:25564265..25564289 (25 bp)
GAAGTGGGACCCCTCAAGATCCTGG
LOC_Os05g44110
OsAffx.27298.1.S1_at--1047--7471Chr05:25564234..25564258 (25 bp)
GTGGGCCCTACTAAGACCAACAAGA
LOC_Os05g44110
OsAffx.27298.1.S1_at--654--10511Chr05:25564074..25564094 (21 bp)
TTCAAGAAGCTTGCCCAATGTAACA
LOC_Os05g44110
OsAffx.27298.1.S1_at--579--10171Chr05:25564043..25564067 (25 bp)
TATTTACTTGGCAACGGGAGCCCCT
LOC_Os05g44110
OsAffx.27298.1.S1_at--463--5851Chr05:25564026..25564050 (25 bp)
GAGCCCCTAACATGTAGGGTGCCCT
LOC_Os05g44110
OsAffx.27298.1.S1_at--186--10091Chr05:25564012..25564036 (25 bp)
TAGGGTGCCCTGGACACGTGGCTAC
LOC_Os05g44110
OsAffx.27298.1.S1_at--61--2731Chr05:25563984..25564008 (25 bp)
AAGCACAGTGGCCACGCCGGAACAA
LOC_Os05g44110
OsAffx.27298.1.S1_at--976--2451Chr05:25563964..25563988 (25 bp)
AACAAGGCTCGGGTGTCTCGACTCT
LOC_Os05g44110
OsAffx.27298.1.S1_at--1134--8631Chr05:25563891..25563915 (25 bp)
TGGGAAACCCGTACCCGCTGTGTTG
LOC_Os05g44110
OsAffx.27298.1.S1_at--36--7411Chr05:25563872..25563896 (25 bp)
GTGTTGCCAACTCTACTAAAGTCGT
LOC_Os05g44110
Target Sequence 
AAGACGCAGCGACCGTGGTTCCCCGGTGCGTGAGCAGCCCTTGGGCTCGGTGGGCCGTCTTCCTCGGCAGCCAGGCCTCG
GTGGCGGCTTGGCATCGGTGGCCGAGCAGCCGGGATGCCAACGCGGTGGCCAGGTGAAGTACGGCGGCCGGACAATGGGG
GCGCCGGTCCGGAGCGGCAGTGCCACCGGCGGCCAGATGGCAGTGCAAAGGGAGCTGGCGGCGAAGTGGGACCCCTCAAG
ATCCTGGGGTACCGTGGGCCCTACTAAGACCAACAAGATCTACATCTTCAAGAAGCTTGCCCAATGTAACAAGAAAATAT
TTACTTGGCAACGGGAGCCCCTAACATGTAGGGTGCCCTGGACACGTGGCTACCCCAAGCACAGTGGCCACGCCGGAACA
AGGCTCGGGTGTCTCGACTCTCGAGGCCCTAGACAAGGGCACGAGCACACCCTCTCCACCGGGCTCTCCTGGGAAACCCG
TACCCGCTGTGTTGCCAACTCTACTAAAGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis