Browse Element(s) Details


OsAffx.27300.1.S1_at

Description tigr:9633.m04118
TID=OsAffx.27300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4415011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative
LOC_Os05g44190Os.54955.1.S1_at11/115+25594388..25599370expressed protein
LOC_Os05g44200Os.5270.1.S1_at11/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.28229.2.S1_x_at3/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.51561.1.S1_x_at1/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27300.1.S1_at--52--9591Chr05:25578729..25578753 (25 bp)
TCTTGCTCCTCGCTGAAGGTGGCAG
LOC_Os05g44150
OsAffx.27300.1.S1_at--62--1531Chr05:25578878..25578902 (25 bp)
AGCAGAGAGCAACCTATCGACGTCT
LOC_Os05g44150
OsAffx.27300.1.S1_at--433--9371Chr05:25578894..25578918 (25 bp)
TCGACGTCTCGAAAGGCCAGGATAG
LOC_Os05g44150
OsAffx.27300.1.S1_at--124--6031Chr05:25578961..25578985 (25 bp)
GAGAGGTTTGATCACCTCATCACCT
LOC_Os05g44150
OsAffx.27300.1.S1_at--765--9591Chr05:25578977..25579001 (25 bp)
TCATCACCTCACCAGGTAGCAAAAG
LOC_Os05g44150
OsAffx.27300.1.S1_at--233--6951Chr05:25578992..25579016 (25 bp)
GTAGCAAAAGGCCAAGATTTCGCTG
LOC_Os05g44150
OsAffx.27300.1.S1_at--213--6531Chr05:25579007..25579031 (25 bp)
GATTTCGCTGGATTGACGTCCGGAT
LOC_Os05g44150
OsAffx.27300.1.S1_at--854--51Chr05:25579018..25579042 (25 bp)
ATTGACGTCCGGATCCATGGATGGC
LOC_Os05g44150
OsAffx.27300.1.S1_at--1028--571Chr05:25579030..25579054 (25 bp)
ATCCATGGATGGCTCACGATCAAAG
LOC_Os05g44150
OsAffx.27300.1.S1_at--870--4031Chr05:25579046..25579070 (25 bp)
CGATCAAAGGGATACGGCTGCCGTT
LOC_Os05g44150
OsAffx.27300.1.S1_at--349--931Chr05:25579107..25579131 (25 bp)
AGGCAACACCGACAGCAGAAGCATG
LOC_Os05g44150
Target Sequence 
TCTTGCTCCTCGCTGAAGGTGGCAGCCGCAGCCGCAGGAGGATCCTCCTCCACGACCACGGCCGCAGGCGCGGCGGCGGT
CATGCTCGCCGCCGGTGCATCGCTGCTGCTGCCGCTGCTCATCTCGTCCTCCTCTCCGACAAGGAAGGCAGCAGAGAGCA
ACCTATCGACGTCTCGAAAGGCCAGGATAGTGGGCACTGCGACTCTGCGAGTGTTGCATTGTATCCAGCAGAGAGAGGTT
TGATCACCTCATCACCTCACCAGGTAGCAAAAGGCCAAGATTTCGCTGGATTGACGTCCGGATCCATGGATGGCTCACGA
TCAAAGGGATACGGCTGCCGTTATCGGCAAAGGGCAGAGAATATCTGCAAGTACAGACAGGCAACACCGACAGCAGAAGC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis