Browse Element(s) Details


OsAffx.27303.1.S1_at

Description tigr:9633.m04121
TID=OsAffx.27303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to FT
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4418011/11FLOWERING LOCUS T protein, putative
LOC_Os06g360801/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative
LOC_Os05g44190Os.54955.1.S1_at11/115+25594388..25599370expressed protein
LOC_Os05g44200Os.5270.1.S1_at11/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.28229.2.S1_x_at3/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.51561.1.S1_x_at1/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0003777molecular_functionmicrotubule motor activity
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27303.1.S1_at--560--7412Chr05:25586103..25586127 (25 bp)
GTGTTGGATCCATTTATTTCAACCA
LOC_Os05g44180
OsAffx.27303.1.S1_at--383--172Chr06:21111003..21111420 (25 bp)
ATTTCAACCATTTCACTCAGAGTAA
LOC_Os06g36080
OsAffx.27303.1.S1_at--677--6091Chr05:25586069..25586093 (25 bp)
GAGTAACCTACAACAGCAGGCTACT
LOC_Os05g44180
OsAffx.27303.1.S1_at--762--5011Chr05:25586040..25586064 (25 bp)
GCAGGAGCAGCGCTTAAACCATCTG
LOC_Os05g44180
OsAffx.27303.1.S1_at--336--9031Chr05:25586017..25586041 (25 bp)
TGCAGTTGTAAGCAAGCCACAGGTT
LOC_Os05g44180
OsAffx.27303.1.S1_at--1032--6111Chr05:25585975..25585996 (22 bp)
GAGGGTTTCCTACACACTGGTATTG
LOC_Os05g44180
OsAffx.27303.1.S1_at--426--2671Chr05:25585712..25585736 (25 bp)
AAGCCCAAGTGACCCATCGCTGAGG
LOC_Os05g44180
OsAffx.27303.1.S1_at--761--4331Chr05:25585699..25585723 (25 bp)
CCATCGCTGAGGGAGTACTTGCACT
LOC_Os05g44180
OsAffx.27303.1.S1_at--729--8031Chr05:25585530..25585712 (25 bp)
GGAGTACTTGCACTGGATGGTAACA
LOC_Os05g44180
OsAffx.27303.1.S1_at--436--6511Chr05:25585505..25585529 (25 bp)
GATATCCCTGAAACAACTTCCATCA
LOC_Os05g44180
OsAffx.27303.1.S1_at--183--3571Chr05:25585413..25585509 (25 bp)
CATCAGCTTTGGTTATGTTCCGCAA
LOC_Os05g44180
Target Sequence 
GTGTTGGATCCATTTATTTCAACCATTTCACTCAGAGTAACCTACAACAGCAGGCTACTTCTGGCAGGAGCAGCGCTTAA
ACCATCTGCAGTTGTAAGCAAGCCACAGGTTGATGTTGGTGGCAATGACATGAGGGTTTCCTACACACTGGTATTGGTGG
ATCCAGATGCCCCAAGCCCAAGTGACCCATCGCTGAGGGAGTACTTGCACTGGATGGTAACAGATATCCCTGAAACAACT
TCCATCAGCTTTGGTTATGTTCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis