Browse Element(s) Details


OsAffx.27299.1.S1_at

Description tigr:9633.m04117
TID=OsAffx.27299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hemoglobin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4414011/11Non-symbiotic hemoglobin 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative
LOC_Os05g44190Os.54955.1.S1_at11/115+25594388..25599370expressed protein
LOC_Os05g44200Os.5270.1.S1_at11/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.28229.2.S1_x_at3/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.51561.1.S1_x_at1/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005344molecular_functionoxygen transporter activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27299.1.S1_at--987--7251Chr05:25576784..25576808 (25 bp)
GTCCTTCGCTCATGGCAATCGATGA
LOC_Os05g44140
OsAffx.27299.1.S1_at--330--2931Chr05:25576757..25576781 (25 bp)
AAGGACTCTGAATCCATTGCTCTCA
LOC_Os05g44140
OsAffx.27299.1.S1_at--118--9011Chr05:25576749..25576773 (25 bp)
TGAATCCATTGCTCTCAAGTTCTTC
LOC_Os05g44140
OsAffx.27299.1.S1_at--427--2831Chr05:25576467..25576757 (25 bp)
AAGTTCTTCCTCAGGATCTTCGAGA
LOC_Os05g44140
OsAffx.27299.1.S1_at--728--8351Chr05:25576435..25576459 (25 bp)
GGCGGCGAAGCAGATGTTCTCGTTC
LOC_Os05g44140
OsAffx.27299.1.S1_at--511--6691Chr05:25576414..25576438 (25 bp)
GTTCCTGCGTGACTCCGGCGACGAC
LOC_Os05g44140
OsAffx.27299.1.S1_at--892--4111Chr05:25576245..25576266 (22 bp)
CGAAGGCATGCGAGTCGGCGACACA
LOC_Os05g44140
OsAffx.27299.1.S1_at--838--1131Chr05:25576233..25576257 (25 bp)
AGTCGGCGACACAGCTGAGGAAGAC
LOC_Os05g44140
OsAffx.27299.1.S1_at--172--2771Chr05:25575818..25575842 (25 bp)
AAGACGGCGTTGCTGGACACCATCA
LOC_Os05g44140
OsAffx.27299.1.S1_at--985--5631Chr05:25575803..25575827 (25 bp)
GACACCATCAAGGACGCGGTGCCGG
LOC_Os05g44140
OsAffx.27299.1.S1_at--113--911Chr05:25575742..25575766 (25 bp)
AGGCGTACGATCAGCTGGCTGCTGC
LOC_Os05g44140
Target Sequence 
GTCCTTCGCTCATGGCAATCGATGAAGAAGGACTCTGAATCCATTGCTCTCAAGTTCTTCCTCAGGATCTTCGAGATCGC
GCCGGCGGCGAAGCAGATGTTCTCGTTCCTGCGTGACTCCGGCGACGACGTGCCCCTCGAGAACCACCCGAAGGCATGCG
AGTCGGCGACACAGCTGAGGAAGACGGGTGACGTGAAGGTGAGGGAGGCGACACTGAGGAGGCTGGGCGCGACGCACGTC
AAAGCCGGCGTCGCCGACGCGTACTTCGAGGTGGTGAAGACGGCGTTGCTGGACACCATCAAGGACGCGGTGCCGGAGAT
GTGGTCGCCGGAGATGAAGGGGGCGTGGGAGGAGGCGTACGATCAGCTGGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis