Browse Element(s) Details


Os.5270.1.S1_at

Description gb:AK061147.1
DB_XREF= gi:32971165
TID=Os.5270.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D08, full insert sequence.
FL= gb:AK061147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4420011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative
LOC_Os05g44190Os.54955.1.S1_at11/115+25594388..25599370expressed protein
LOC_Os05g44200Os.5270.1.S1_at11/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.28229.2.S1_x_at3/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.51561.1.S1_x_at1/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5270.1.S1_at--278--2511Chr05:25600600..25600624 (25 bp)
AACATCTACGGCATCTTCGACGACA
LOC_Os05g44200
Os.5270.1.S1_at--705--7271Chr05:25600119..25600593 (25 bp)
GTGCACCCGGATCCCACGGTTTGAA
LOC_Os05g44200
Os.5270.1.S1_at--54--6391Chr05:25600110..25600584 (25 bp)
GATCCCACGGTTTGAAGGTGACGAA
LOC_Os05g44200
Os.5270.1.S1_at--861--4551Chr05:25600020..25600044 (25 bp)
GCGCCAACAGGCACGAGTACGCCTT
LOC_Os05g44200
Os.5270.1.S1_at--366--1911Chr05:25599976..25600000 (25 bp)
ACGGAGGCGGCCAACGTACTCGTCG
LOC_Os05g44200
Os.5270.1.S1_at--412--9411Chr05:25599957..25599981 (25 bp)
TCGTCGGCCAGAGGACGTACAGCGC
LOC_Os05g44200
Os.5270.1.S1_at--213--5031Chr05:25599926..25599950 (25 bp)
GCAGTCCGACGTGCACCCGGTGGAT
LOC_Os05g44200
Os.5270.1.S1_at--433--2011Chr05:25599895..25599919 (25 bp)
ACTCTCGCGAGCCTCTAATTAAGCT
LOC_Os05g44200
Os.5270.1.S1_at--197--3151Chr05:25599879..25599903 (25 bp)
AATTAAGCTCGATCACATGGCCAAA
LOC_Os05g44200
Os.5270.1.S1_at--408--10331Chr05:25599790..25599814 (25 bp)
TTTACTACAATGTACAACGACGTGT
LOC_Os05g44200
Os.5270.1.S1_at--899--9191Chr05:25599727..25599751 (25 bp)
TCCAGTGTTCGGTTAGTTTGGTAAG
LOC_Os05g44200
Target Sequence 
AACATCTACGGCATCTTCGACGACATCCTCGGTGCACCCGGATCCCACGGTTTGAAGGTGACGAACCAGGGGTGCTGTGG
GGNTGGGGAGGAACAACGGTCAGGTGACGTGCCTGCCGTTCCAGACGCCGTGCGCCAACAGGCACGAGTACGCCTTNTGG
GACGCGTTCCACCCGACGGAGGCGGCCAACGTACTCGTCGGCCAGAGGACGTACAGCGCGCGGCTGCAGTCCGACGTGCA
CCCGGTGGATCTCCGCACTCTCGCGAGCCTCTAATTAAGCTCGATCACATGGCCAAAAAATTGCTTATATATAGTTATAT
GGCAATTGCCAAATAACATTATAGGTATCATGGATTTTTTTTTTACTACAATGTACAACGACGTGTAGTAGATTNTTTTG
AGATCNCAGTTATTATATTGTTNTTCCAGTGTTCGGTTAGTTTGGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis