Browse Element(s) Details


Os.54955.1.S1_at

Description gb:AK107178.1
DB_XREF= gi:32992387
TID=Os.54955.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G11, full insert sequence.
FL= gb:AK107178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative
LOC_Os05g44190Os.54955.1.S1_at11/115+25594388..25599370expressed protein
LOC_Os05g44200Os.5270.1.S1_at11/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.28229.2.S1_x_at3/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.51561.1.S1_x_at1/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54955.1.S1_at--246--4671Chr05:25598719..25598743 (25 bp)
GCGTGGTCTGATTCTGTCAATCGGG
LOC_Os05g44190
Os.54955.1.S1_at--581--331Chr05:25598788..25598812 (25 bp)
ATACTTGAGCCAGGTGCTAGTCCTA
LOC_Os05g44190
Os.54955.1.S1_at--772--6091Chr05:25598833..25598857 (25 bp)
GAGTCATGGCCTTTGCATTCGATTA
LOC_Os05g44190
Os.54955.1.S1_at--689--8171Chr05:25598957..25598981 (25 bp)
GGAACTTCATTTGCGGTACAACCTG
LOC_Os05g44190
Os.54955.1.S1_at--845--2191Chr05:25598974..25598998 (25 bp)
ACAACCTGAAACCAGTGTCGCCGAA
LOC_Os05g44190
Os.54955.1.S1_at--858--3571Chr05:25599006..25599030 (25 bp)
CATAGTTTCGGCTCATGACAGGTAT
LOC_Os05g44190
Os.54955.1.S1_at--923--691Chr05:25599045..25599069 (25 bp)
ATGAGAATTCTCAGGCGTTCACAAG
LOC_Os05g44190
Os.54955.1.S1_at--748--2051Chr05:25599187..25599211 (25 bp)
ACTTCATATGCCGTGCAGCACTTTT
LOC_Os05g44190
Os.54955.1.S1_at--864--3671Chr05:25599207..25599231 (25 bp)
CTTTTTTCCTCTTGCATTTCTGTAA
LOC_Os05g44190
Os.54955.1.S1_at--687--10671Chr05:25599237..25599261 (25 bp)
TTCCTTTCTTGATCTCTCGTACAAA
LOC_Os05g44190
Os.54955.1.S1_at--598--6951Chr05:25599255..25599279 (25 bp)
GTACAAACCTCGTGAAGCCTTCAGG
LOC_Os05g44190
Target Sequence 
GCGTGGTCTGATTCTGTCAATCGGGTAAGAACAATTCTACCTGTTAAGTTGAGATCTGGAGCGAAGCATATACTTGAGCC
AGGTGCTAGTCCTACTGCTACCTTGGGCCAAGAGGAGTCATGGCCTTTGCATTCGATTAAAACTTTTGTAGTGGAGGATG
ATGCTCACGCAGTAGGCACATCAAAGAAGAGAGACGAAGAAATTTGCAGAGTCTGAAGAAATTTGTGAGTGATGATAAGG
AACTTCATTTGCGGTACAACCTGAAACCAGTGTCGCCGAAAACAAATCATAGTTTCGGCTCATGACAGGTATGTGCAAAG
GAATACATGAGAATTCTCAGGCGTTCACAAGGGGAAAATGATGGTATATGCATCAATGCATGTGGTAGTTTCTGAGTATG
TTCATTATGGACTGCATTAATTACTTCACAACAAGCAATCCTATGACGAGCATGCCAGATAGTAATGCACTTCATATGCC
GTGCAGCACTTTTTTCCTCTTGCATTTCTGTAATCAATTTCCTTTCTTGATCTCTCGTACAAACCTCGTGAAGCCTTCAG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis