Browse Element(s) Details


OsAffx.27302.1.S1_at

Description tigr:9633.m04120
TID=OsAffx.27302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclic phosphodiesterase (EC 3.1.4.-) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4417011/11Cyclic phosphodiesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative
LOC_Os05g44190Os.54955.1.S1_at11/115+25594388..25599370expressed protein
LOC_Os05g44200Os.5270.1.S1_at11/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.28229.2.S1_x_at3/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g44200Os.51561.1.S1_x_at1/115+25599615..25601846GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006388biological_processtRNA splicing
GO:0005737cellular_componentcytoplasm
GO:0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27302.1.S1_at--1006--2671Chr05:25583537..25583561 (25 bp)
AAGCGAGCGATCATTGCTGTGGCCA
LOC_Os05g44170
OsAffx.27302.1.S1_at--82--9131Chr05:25583551..25583575 (25 bp)
TGCTGTGGCCACTTTGGGTACGAGA
LOC_Os05g44170
OsAffx.27302.1.S1_at--664--6991Chr05:25583568..25583682 (25 bp)
GTACGAGAGATCAACCCCATATATG
LOC_Os05g44170
OsAffx.27302.1.S1_at--955--2131Chr05:25583685..25583709 (25 bp)
ACACGTCAGCCTCTTATATGGAGAC
LOC_Os05g44170
OsAffx.27302.1.S1_at--420--7931Chr05:25583773..25583797 (25 bp)
GGATTGCAGTTTGAGATCTCCGAGC
LOC_Os05g44170
OsAffx.27302.1.S1_at--724--6031Chr05:25583785..25583809 (25 bp)
GAGATCTCCGAGCTTGCGCTGTATA
LOC_Os05g44170
OsAffx.27302.1.S1_at--160--5931Chr05:25583794..25583818 (25 bp)
GAGCTTGCGCTGTATAGGACGGATA
LOC_Os05g44170
OsAffx.27302.1.S1_at--737--8071Chr05:25583810..25583834 (25 bp)
GGACGGATACCGAGGACAAAAGCTT
LOC_Os05g44170
OsAffx.27302.1.S1_at--567--8551Chr05:25583852..25583876 (25 bp)
TGGAGATCTGCCACCTTGAGAGGAA
LOC_Os05g44170
OsAffx.27302.1.S1_at--364--2871Chr05:25583875..25583899 (25 bp)
AAGTGATTAATCTCCTCCCGTTGGT
LOC_Os05g44170
OsAffx.27302.1.S1_at--628--9151Chr05:25583949..25583973 (25 bp)
TGCCCAAATGCAAAGCGATGCCTAA
LOC_Os05g44170
Target Sequence 
AAGCGAGCGATCATTGCTGTGGCCACTTTGGGTACGAGAGATCAACCCCATATATGCCACACGTCAGCCTCTTATATGGA
GACCTGACAGATGAGGAGAAGGAGGTAGCAAGGAAGAAGGTAGAGGAGATAGACAAGGAGATTTGTGGATTGCAGTTTGA
GATCTCCGAGCTTGCGCTGTATAGGACGGATACCGAGGACAAAAGCTTGGAGTCATGGGAATTGGTGGAGATCTGCCACC
TTGAGAGGAAGTGATTAATCTCCTCCCGTTGGTGCTTCTGCCATAAGTTAAGTTTGAGGTGAGTTTGTTCAATAATAAAG
CTTGCCCAAATGCAAAGCGATGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis