Browse Element(s) Details


OsAffx.18465.1.S1_at

Description tigr:9638.m02620
TID=OsAffx.18465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3050011/11hypothetical protein
LOC_Os05g094801/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0005622cellular_componentintracellular
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18465.1.S1_at--1145--9611Chr10:15532167..15532191 (25 bp)
TCATGCTCGATCATACGCTCGCGTT
LOC_Os10g30500
OsAffx.18465.1.S1_at--250--631Chr10:15532165..15532189 (25 bp)
ATGCTCGATCATACGCTCGCGTTGG
LOC_Os10g30500
OsAffx.18465.1.S1_at--1127--4792Chr05:5310123..5310158 (24 bp)
GCTCGCGTTGGCAGCAACCATGGCA
LOC_Os05g09480
OsAffx.18465.1.S1_at--876--6611Chr10:15532145..15532169 (25 bp)
GTTGGCAGCAACCATGGCACATGTC
LOC_Os10g30500
OsAffx.18465.1.S1_at--505--1491Chr10:15532139..15532163 (25 bp)
AGCAACCATGGCACATGTCGCCGCT
LOC_Os10g30500
OsAffx.18465.1.S1_at--453--2691Chr10:15532096..15532120 (25 bp)
AAGCTCCTCGAGAGTCGAGATTCCG
LOC_Os10g30500
OsAffx.18465.1.S1_at--1009--9371Chr10:15532089..15532113 (25 bp)
TCGAGAGTCGAGATTCCGCCGGGCA
LOC_Os10g30500
OsAffx.18465.1.S1_at--308--1771Chr10:15532043..15532067 (25 bp)
ACCTGCAGTACGCAAACATGATCAT
LOC_Os10g30500
OsAffx.18465.1.S1_at--850--1171Chr10:15532037..15532061 (25 bp)
AGTACGCAAACATGATCATCACCAC
LOC_Os10g30500
OsAffx.18465.1.S1_at--218--4371Chr10:15532016..15532040 (25 bp)
CCACGGAGCGGCAACTGTTGGAGAC
LOC_Os10g30500
OsAffx.18465.1.S1_at--1136--5111Chr10:15532006..15532030 (25 bp)
GCAACTGTTGGAGACGGAGGCTGAG
LOC_Os10g30500
Target Sequence 
TCATGCTCGATCATACGCTCGCGTTGGCAGCAACCATGGCACATGTCGCCGCTGGGCTTCGACTGGAGGGGAAGCTCCTC
GAGAGTCGAGATTCCGCCGGGCACGGTGGGCAGCGCGGTGCTGGACCTGCAGTACGCAAACATGATCATCACCACGGAGC
GGCAACTGTTGGAGACGGAGGCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis