Browse Element(s) Details


OsAffx.6822.1.S1_x_at

Description tigr:9638.m02618
TID=OsAffx.6822.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3048010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6822.1.S1_x_at--897--3512Chr10:15529820..15529844 (25 bp)
CATCCACGGCAACGATACGCTCTGG
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--957--1931Chr10:15529815..15529839 (25 bp)
ACGGCAACGATACGCTCTGGCGGCA
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--401--2591Chr10:15529810..15529834 (25 bp)
AACGATACGCTCTGGCGGCACGCAG
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--356--1891Chr10:15529809..15529833 (25 bp)
ACGATACGCTCTGGCGGCACGCAGG
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--149--3491Chr10:15529788..15529812 (25 bp)
CAGGCAGAGCGTTGCGTACGCGGGT
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--225--4091Chr10:15529759..15529780 (22 bp)
CGAGCGAACGATCGATCTCCGGCAG
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--26--4271NONE
CCGGCAGCAAGAAGATGGAATGGCA
NONE
OsAffx.6822.1.S1_x_at--687--5271Chr10:15528871..15528895 (25 bp)
GAATGGCAAAGCTTCAATATGATGC
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--597--2351Chr10:15528864..15528888 (25 bp)
AAAGCTTCAATATGATGCCCAGGAC
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--756--1551Chr10:15528862..15528886 (25 bp)
AGCTTCAATATGATGCCCAGGACGG
LOC_Os10g30480
OsAffx.6822.1.S1_x_at--500--3631Chr10:15528860..15528884 (25 bp)
CTTCAATATGATGCCCAGGACGGCG
LOC_Os10g30480
Target Sequence 
CATCCACGGCAACGATACGCTCTGGCGGCACGCAGGCAGAGCGTTGCGTACGCGGGTGGGAGAGCGAGCGAACGATCGAT
CTCCGGCAGCAAGAAGATGGAATGGCAAAGCTTCAATATGATGCCCAGGACGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6822.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis