Browse Element(s) Details


Os.46675.1.S1_at

Description gb:CB628631
DB_XREF= gi:29623620
DB_XREF=OSIIEb04F04.r
CLONE=OSIIEb04F04
TID=Os.46675.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoglycerate kinase (OSJNBa0046P18.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3055010/11methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004618molecular_functionphosphoglycerate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46675.1.S1_at--514--2351Chr10:15557374..15557396 (23 bp)
AAAGCTTGTTGTAAGGTGCCTTCGG
LOC_Os10g30550
Os.46675.1.S1_at--435--4451Chr10:15557357..15557381 (25 bp)
GCCTTCGGGATGTTGCTTCAGTTGA
LOC_Os10g30550
Os.46675.1.S1_at--1089--2132Chr12:20887713..20887732 (20 bp)
ACAGTTGGCTCTTGTCACTATACAG
NONE
Os.46675.1.S1_at--761--10171Chr10:15556444..15556464 (21 bp)
TATACAGTGCCCAAATCCTGATTTC
LOC_Os10g30550
Os.46675.1.S1_at--788--8831Chr10:15556363..15556387 (25 bp)
TGATCTTCTTCAGCCCAATGGAAAG
LOC_Os10g30550
Os.46675.1.S1_at--874--471Chr10:15555840..15555864 (25 bp)
ATCTGCAGTCTGACGTGGAGTCCGT
LOC_Os10g30550
Os.46675.1.S1_at--976--2771Chr10:15555801..15555825 (25 bp)
AAGAGCAGTTCATGACGCACGGCAA
LOC_Os10g30550
Os.46675.1.S1_at--544--7511Chr10:15555681..15555705 (25 bp)
GTGGAGCTCCCATGTACAGAACGAT
LOC_Os10g30550
Os.46675.1.S1_at--997--1971Chr10:15555628..15555652 (25 bp)
ACTGCGCCTCTTGACATTTTGGGTT
LOC_Os10g30550
Os.46675.1.S1_at--980--8611Chr10:15555610..15555633 (24 bp)
TGGGTTTTCAGGTTCCATTGTTCGT
LOC_Os10g30550
Os.46675.1.S1_at--1153--31NONE
ATTGTTCGTCTCCTTACTAGTAGTA
NONE
Target Sequence 
AAAGCTTGTTGTAAGGTGCCTTCGGGATGTTGCTTCAGTTGACAAAAGGAATCTATATTTTGTNTCAACAAATGCAACAT
CCACATTTCGATCAATTGTNTCAAGTTACCCTGGACAGTTGGCTCTTGTCACTATACAGTGCCCAAATCCTGATTTCAAC
ANAGAGCAGAACAGGTGGAGAATGGTACGAAGAATGCTNGTTGAAGCTATTGCTGATCTTCTTCAGCCCAATGGAAAGGT
TTATCTGCAGTCTGACGTGGAGTCCGTCCTGCTNNGNATGAAAGAGCAGTTCATGACGCACGGCAAGGGCCAGCTGGTGG
TGGACGACGATGGCGGCGGCGACCACCAGATGGACAACCCGTTCGGCGCTGCGTCTGACTGGGAGCGCCATGTGCTGGCT
CGTGGAGCTCCCATGTACAGAACGATGCTACGCAAAGTGTGACGGGACGGGAGCACTGCGCCTCTTGACATTTTGGGTTT
TCAGGTTCCATTGTTCGTCTCCTTACTAGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis