Browse Element(s) Details


Os.46315.3.S1_x_at

Description gb:NM_196706.1
DB_XREF= gi:37534771
TID=Os.46315.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46315 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative selenium-binding protein (OSJNBa0046P18.15), mRNA.
PROD=putative selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3059011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed
LOC_Os10g30610Os.27646.1.A1_at11/1110+15599403..15607334ABC transporter family protein, putative, expressed
LOC_Os10g30620Os.46810.2.S1_x_at9/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.2.S1_at8/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.1.S1_at4/1110+15609052..15613146hypothetical protein
LOC_Os10g30620OsAffx.3276.1.S1_at3/1110+15609052..15613146hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46315.3.S1_x_at--277--7291Chr10:15589789..15589813 (25 bp)
GTGCCGGATGAGATCACATACCTTA
LOC_Os10g30590
Os.46315.3.S1_x_at--1044--8091Chr10:15589848..15589872 (25 bp)
GGACGAGGCTTGGAGCTTCTTTCGC
LOC_Os10g30590
Os.46315.3.S1_x_at--1004--8331Chr10:15589889..15589913 (25 bp)
GGCTGAGACCACATGTCGAGCACTA
LOC_Os10g30590
Os.46315.3.S1_x_at--595--4071Chr10:15589905..15589929 (25 bp)
CGAGCACTATGCTTGCCTGGTAGAT
LOC_Os10g30590
Os.46315.3.S1_x_at--307--8691Chr10:15590004..15590028 (25 bp)
TGTGCTTGGTGCTCTCTTGAATGCC
LOC_Os10g30590
Os.46315.3.S1_x_at--438--10751Chr10:15590020..15590044 (25 bp)
TTGAATGCCTGTCATCTCCATGGAT
LOC_Os10g30590
Os.46315.3.S1_x_at--574--931Chr10:15590071..15590095 (25 bp)
AGGCAGCTTGTCCATTTGCAGCCAG
LOC_Os10g30590
Os.46315.3.S1_x_at--641--871Chr10:15590102..15590126 (25 bp)
ATGGCCGGTACATTGGTCTGTCGAA
LOC_Os10g30590
Os.46315.3.S1_x_at--654--9471Chr10:15590118..15590142 (25 bp)
TCTGTCGAATATCTACGCTGTTGCT
LOC_Os10g30590
Os.46315.3.S1_x_at--416--1071Chr10:15590235..15590259 (25 bp)
AGGGATCTGCAGATTCATTGCCCAA
LOC_Os10g30590
Os.46315.3.S1_x_at--163--9671Chr10:15590268..15590292 (25 bp)
TCACCCGGGCTCAGCAGAGATTTAT
LOC_Os10g30590
Target Sequence 
GTGCCGGATGAGATCACATACCTTAGTCTGTTAAGCGCTTGTGTGCATGGTGGTTTGGTGGACGAGGCTTGGAGCTTCTT
TCGCTCGCTTGAAGCTCAGGGGCTGAGACCACATGTCGAGCACTATGCTTGCCTGGTAGATGTGCTTGGTCGAGCAGGCC
GCTTAGAGGAAGCATATGGTGTTGTTAAGAGTATGCCAATGAAGCCGAGTGTTTCTGTGCTTGGTGCTCTCTTGAATGCC
TGTCATCTCCATGGATGGGTGGAGCTGGGGGAGGCAGTCGGCAGGCAGCTTGTCCATTTGCAGCCAGACCACGATGGCCG
GTACATTGGTCTGTCGAATATCTACGCTGTTGCTAGGCGGTGGCAAGAGGCAAAAAAAGCGAGAAAGGTGATGGAGGAGA
GAGGCGTGAAAAAGGTTCCTGGATTTAGTGAGATTGATGTTGGCAGAGGGATCTGCAGATTCATTGCCCAAGATAAGACT
CACCCGGGCTCAGCAGAGATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46315.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis