Browse Element(s) Details


Os.46674.1.S1_at

Description gb:NM_196707.1
DB_XREF= gi:37534773
TID=Os.46674.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46674 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative serinethreonine kinase (OSJNBa0046P18.16), mRNA.
PROD=putative serinethreonine kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3060010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed
LOC_Os10g30610Os.27646.1.A1_at11/1110+15599403..15607334ABC transporter family protein, putative, expressed
LOC_Os10g30620Os.46810.2.S1_x_at9/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.2.S1_at8/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.1.S1_at4/1110+15609052..15613146hypothetical protein
LOC_Os10g30620OsAffx.3276.1.S1_at3/1110+15609052..15613146hypothetical protein
LOC_Os10g30630NANA10+15615504..15615896hypothetical protein
LOC_Os10g30640Os.22913.1.S1_at10/1110+15616867..15620695Translin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46674.1.S1_at--847--4731Chr10:15592879..15592903 (25 bp)
GCTGTCAGACTTCGGATTGGCTAGA
LOC_Os10g30600
Os.46674.1.S1_at--443--6611Chr10:15592865..15592889 (25 bp)
GATTGGCTAGACTGGTATCTCAGGA
LOC_Os10g30600
Os.46674.1.S1_at--918--7111NONE
GTCTCCACTGCGGTGGTGGGAACTA
NONE
Os.46674.1.S1_at--633--1591Chr10:15592216..15592240 (25 bp)
AGCTCCAGAGTACATCCACACAGGG
LOC_Os10g30600
Os.46674.1.S1_at--899--7171Chr10:15592130..15592154 (25 bp)
GTCGGCGACCTCTGGACAGGAACAG
LOC_Os10g30600
Os.46674.1.S1_at--867--271Chr10:15592083..15592107 (25 bp)
ATAGAGTGGGTGAAGCCCTACTCCA
LOC_Os10g30600
Os.46674.1.S1_at--557--6771Chr10:15592010..15592034 (25 bp)
GTTACAGCTTGAAGTCGGCGGCCAA
LOC_Os10g30600
Os.46674.1.S1_at--282--7731Chr10:15591976..15592000 (25 bp)
GGTGGCAAACAAGTGCCTCGTGCGC
LOC_Os10g30600
Os.46674.1.S1_at--401--3491Chr10:15591946..15591970 (25 bp)
CAGGCACCGGCCAAAGATGAGCGAG
LOC_Os10g30600
Os.46674.1.S1_at--447--511Chr10:15591900..15591924 (25 bp)
ATCGTCGATAGCACTGACCTCGGAA
LOC_Os10g30600
Os.46674.1.S1_at--1110--4971Chr10:15591868..15591892 (25 bp)
GCATCCCCTCATCAGCAAGTCAAGA
LOC_Os10g30600
Target Sequence 
GCTGTCAGACTTCGGATTGGCTAGACTGGTATCTCAGGATGGCAGCCATGTCTCCACTGCGGTGGTGGGAACTATTGGGT
ATGCAGCTCCAGAGTACATCCACACAGGGCGCCTCAGCAGCAAGAACGACATATGGAGCTACGGCGTGGTGCTCTACGAA
CTCCTTACCGGTCGGCGACCTCTGGACAGGAACAGGCCGAGAGGCGAACAGAACCTCATAGAGTGGGTGAAGCCCTACTC
CACTGACTCANAGAAGCTTGAAATCATAATGGATCCAAGGCTTGAAGGGAGTTACAGCTTGAAGTCGGCGGCCAAGCTCG
CCTCGGTGGCAAACAAGTGCCTCGTGCGCCACGCCAGGCACCGGCCAAAGATGAGCGAGGTGCTGGAGATGGTGCAGAAG
ATCGTCGATAGCACTGACCTCGGAACGCCGGAGCATCCCCTCATCAGCAAGTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis