Browse Element(s) Details


Os.27646.1.A1_at

Description gb:CB674801
DB_XREF= gi:29678526
DB_XREF=OSJNEe10A19.r
CLONE=OSJNEe10A19
TID=Os.27646.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter (OSJNBa0046P18.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3061011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed
LOC_Os10g30610Os.27646.1.A1_at11/1110+15599403..15607334ABC transporter family protein, putative, expressed
LOC_Os10g30620Os.46810.2.S1_x_at9/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.2.S1_at8/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.1.S1_at4/1110+15609052..15613146hypothetical protein
LOC_Os10g30620OsAffx.3276.1.S1_at3/1110+15609052..15613146hypothetical protein
LOC_Os10g30630NANA10+15615504..15615896hypothetical protein
LOC_Os10g30640Os.22913.1.S1_at10/1110+15616867..15620695Translin family protein, expressed
LOC_Os10g30650NANA10+15625290..15628562transposon protein, putative, unclassified
LOC_Os10g30660NANA10+15629205..15635359retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27646.1.A1_at--921--10271Chr10:15606437..15606461 (25 bp)
TTTGCTATTTGGTTTGAGCTCGGAT
LOC_Os10g30610
Os.27646.1.A1_at--744--7931Chr10:15606458..15606558 (25 bp)
GGATTAGCTCAATTGTGTTCTGCGT
LOC_Os10g30610
Os.27646.1.A1_at--1063--7411Chr10:15606548..15606572 (25 bp)
GTGTTCTGCGTTAATACCTGTGGTA
LOC_Os10g30610
Os.27646.1.A1_at--657--6871Chr10:15606570..15606594 (25 bp)
GTATTGGTTTTGGTAGGCACTCAAC
LOC_Os10g30610
Os.27646.1.A1_at--266--7931Chr10:15606618..15606642 (25 bp)
GGATTATGCTATCCCAAATGGGCAC
LOC_Os10g30610
Os.27646.1.A1_at--413--8251Chr10:15606638..15606662 (25 bp)
GGCACTAGAGGCTCTCATTATTGCA
LOC_Os10g30610
Os.27646.1.A1_at--972--3991Chr10:15606790..15606814 (25 bp)
CGTGTGGCTGATTACTCGATGTGGA
LOC_Os10g30610
Os.27646.1.A1_at--400--2531Chr10:15606845..15606869 (25 bp)
AACTTTGTTCTTTGCATCGTCATTG
LOC_Os10g30610
Os.27646.1.A1_at--991--4971Chr10:15606858..15606882 (25 bp)
GCATCGTCATTGTCATGCTCATGGG
LOC_Os10g30610
Os.27646.1.A1_at--1003--7831Chr10:15606883..15606907 (25 bp)
GGTACTCTTCCGGTTTATCGCTCTG
LOC_Os10g30610
Os.27646.1.A1_at--214--10151Chr10:15606898..15606922 (25 bp)
TATCGCTCTGCTTAGCCTGTTGAAG
LOC_Os10g30610
Target Sequence 
TTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCA
ACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAA
AATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGC
ATCGTCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27646.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis