Browse Element(s) Details


Os.46810.1.S1_at

Description gb:AK110558.1
DB_XREF= gi:32995767
TID=Os.46810.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015F09b.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C09, full insert sequence.
FL= gb:AK110558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1945211/11expressed protein
LOC_Os10g306204/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46810.1.S1_at--733--3951Chr03:10922633..10922657 (25 bp)
CGGACTGATTGTTGACGCCTGAGGA
LOC_Os03g19452
Os.46810.1.S1_at--815--8931Chr03:10922645..10922669 (25 bp)
TGACGCCTGAGGATTATGCTTCAAG
LOC_Os03g19452
Os.46810.1.S1_at--1084--4892Chr03:10922662..10922686 (25 bp)
GCTTCAAGGTTCTTTGATCTCGTGT
LOC_Os03g19452
Os.46810.1.S1_at--642--6412Chr03:10922677..10922701 (25 bp)
GATCTCGTGTTACTTCGGTGACAGA
LOC_Os03g19452
Os.46810.1.S1_at--632--51Chr03:10922701..10922725 (25 bp)
ATTGATTGTTTTATGCCTGAGGATT
LOC_Os03g19452
Os.46810.1.S1_at--775--431Chr03:10922730..10922754 (25 bp)
ATCTATGCATATGCTCGTCCAACGT
LOC_Os03g19452
Os.46810.1.S1_at--733--5192Chr03:10922763..10922787 (25 bp)
GCAATCCATTGCCAGTTTGTTTAGA
LOC_Os03g19452
Os.46810.1.S1_at--867--4911Chr03:10922804..10922828 (25 bp)
GCTTGCAATTGCACGTGTTATTTTT
LOC_Os03g19452
Os.46810.1.S1_at--471--2791Chr03:10922853..10922877 (25 bp)
AAGAGTGCACACTTGATTGTCAATA
LOC_Os03g19452
Os.46810.1.S1_at--117--5452Chr03:10922891..10922915 (25 bp)
GAACTAGTCCTACTATTTCAGTTTC
LOC_Os03g19452
Os.46810.1.S1_at--192--1251Chr03:10922996..10923020 (25 bp)
AGTTGATTCCATTTGCCAGTGTTTC
LOC_Os03g19452
Target Sequence 
CGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTT
ATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTNGCAATCCATTGCCAGTTTGTTTAGAAATT
AGAACAATCTNTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTG
TCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTA
TTTTGTCAACAGGTATTTTGATTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis