Browse Element(s) Details


OsAffx.3275.1.S1_at

Description tigr:9631.m01916
TID=OsAffx.3275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3275.1.S1_at--1156--8751Chr03:10894650..10894674 (25 bp)
TGTATGTCTACAACCTCCAAACTGC
LOC_Os03g19400
OsAffx.3275.1.S1_at--1013--8231Chr03:10894692..10894716 (25 bp)
GGCACCGGGCCATTGAGAAAGCATT
LOC_Os03g19400
OsAffx.3275.1.S1_at--299--2151Chr03:10894730..10894754 (25 bp)
ACAGAAGGCCTGTCTGCCGCTGAGG
LOC_Os03g19400
OsAffx.3275.1.S1_at--977--8251Chr03:10894798..10894822 (25 bp)
GGCAGCTCGTCAAGCCAAGAGGATA
LOC_Os03g19400
OsAffx.3275.1.S1_at--194--7551Chr03:10894826..10894850 (25 bp)
GGGCCGATAATTTCTTCTGGTTGGG
LOC_Os03g19400
OsAffx.3275.1.S1_at--991--10591Chr03:10894840..10894864 (25 bp)
TTCTGGTTGGGACTTCTTTGAAGCC
LOC_Os03g19400
OsAffx.3275.1.S1_at--254--5431Chr03:10894859..10894883 (25 bp)
GAAGCCATGTACTTCGGTGGAAGCA
LOC_Os03g19400
OsAffx.3275.1.S1_at--270--8931Chr03:10894884..10894908 (25 bp)
TGACTGAAGGTTTTCTCCGAGGTAC
LOC_Os03g19400
OsAffx.3275.1.S1_at--224--3951Chr03:10894909..10894933 (25 bp)
CGGCACCCTATTTGGAACCTATGTA
LOC_Os03g19400
OsAffx.3275.1.S1_at--7--10171Chr03:10894973..10894997 (25 bp)
TATCTTACAGGAAGCCATCTGGGCA
LOC_Os03g19400
OsAffx.3275.1.S1_at--635--251Chr03:10895055..10895079 (25 bp)
ATATGCTTCAGTTTGTCAAGCCAGA
LOC_Os03g19400
Target Sequence 
TGTATGTCTACAACCTCCAAACTGCACATACGGAAAGGGTGAGGCACCGGGCCATTGAGAAAGCATTGGCTGATGCTGTG
ACAGAAGGCCTGTCTGCCGCTGAGGCAGCAAAGCAAGCTCAGAAGGTTGGTGCGAAAGCCGCAAAAGTGGCAGCTCGTCA
AGCCAAGAGGATATTGGGGCCGATAATTTCTTCTGGTTGGGACTTCTTTGAAGCCATGTACTTCGGTGGAAGCATGACTG
AAGGTTTTCTCCGAGGTACCGGCACCCTATTTGGAACCTATGTAGGTGGGTTCCATGGTGAGGAGAGGCTGGGGAGGTTT
GGTTATCTTACAGGAAGCCATCTGGGCAGTTGGGTTGGTGGAAGAATTGGATTGATGATTTACGATGTCATAAATGGCTT
GAAGTATATGCTTCAGTTTGTCAAGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis