Browse Element(s) Details


OsAffx.32260.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=petA
TID=OsAffx.32260.1
CNT=1
FEA=DNA_41
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome f (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=cytochrome f
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g193605/11hypothetical protein
LOC_Os09g194001/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32260.1.A1_at--110--17310Chr08:9276864..9276888 (25 bp)
ACCATCAGGATAGATCTGTCCCCTT
NONE
OsAffx.32260.1.A1_at--885--1897Chr08:9276931..9276955 (25 bp)
ACGTCTTTCTTCATAGCAGGGTCGG
NONE
OsAffx.32260.1.A1_at--939--40311Chr08:9276974..9276998 (25 bp)
CGATTTCACTATATTTCTTACCGGG
NONE
OsAffx.32260.1.A1_at--934--10558Chr08:9276988..9277012 (25 bp)
TTCTTACCGGGAACAGGGCCTATCA
NONE
OsAffx.32260.1.A1_at--857--6519Chr08:9277055..9277079 (25 bp)
GATTTCCTATCTTTTCTTTCAACTC
NONE
OsAffx.32260.1.A1_at--759--4578Chr08:9277100..9277124 (25 bp)
GCGCTAATTCGAATCCCTCGGGCAA
NONE
OsAffx.32260.1.A1_at--908--257Chr08:9277255..9277279 (25 bp)
ATATCCACAGGCTTATTCGCTAAAT
NONE
OsAffx.32260.1.A1_at--219--8257Chr08:9277287..9277311 (25 bp)
GGCACATACAATTCGTCCAGTTGCT
NONE
OsAffx.32260.1.A1_at--167--7237Chr08:9277301..9277325 (25 bp)
GTCCAGTTGCTTCTCGTGGGTTTTC
NONE
OsAffx.32260.1.A1_at--1103--7877Chr08:9277319..9277343 (25 bp)
GGTTTTCATAACCTTGCTGCGCAAA
NONE
OsAffx.32260.1.A1_at--874--2276Chr08:9277403..9277427 (25 bp)
AAATCGATCGAGTCATCTGTTCCTT
NONE
Target Sequence 
ACCATCAGGATAGATCTGTCCCCTTCCTCGGTTTCCCCCCACATATATGGGATATTTTAAGAAATGAACGTCTTTCTTCA
TAGCAGGGTCGGGGGAAAGAATGGGAAAGACGATTTCACTATATTTCTTACCGGGAACAGGGCCTATCACAAGAATATTT
TTTTTATTGGGACGATAACTCTGAAAAGAGAGATTTCCTATCTTTTCTTTCAACTCAGGAGAAATACGGTCGGGCGGCGC
TAATTCGAATCCCTCGGGCAAAATAAGAACAGCACCCACATTCAACCCTCCCTTTTTCCCATTAGCAAGAACTTGTTTCA
GTTGCATATCATAAGGAATTCGAAGAACTGCTTCAAATACAGTATCGGGAAGCACTGCTTGGGGAACTTCAATATCCACA
GGCTTATTCGCTAAATGGCAATTGGCACATACAATTCGTCCAGTTGCTTCTCGTGGGTTTTCATAACCTTGCTGCGCAAA
AATGGGATATGCATTTGAAATAGATGTCCGAGTTATTACGTATATCATGATCGATACAGAAATCGATCGAGTCATCTGTT
CCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32260.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis