Browse Element(s) Details


Os.9620.1.S1_at

Description gb:AK102205.1
DB_XREF= gi:32987414
TID=Os.9620.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087G11, full insert sequence.
FL= gb:AK102205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1941011/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9620.1.S1_at--610--3371Chr03:10903693..10903717 (25 bp)
CACCATGTGAAGGTCCTGAGGCCGA
LOC_Os03g19410
Os.9620.1.S1_at--867--651Chr03:10903731..10903846 (25 bp)
ATGCAAAGATCGCTTCTGTGATGAA
LOC_Os03g19410
Os.9620.1.S1_at--990--10611Chr03:10904288..10904312 (25 bp)
TTCGGTTGGCTGTTTGTGAGCTCAT
LOC_Os03g19410
Os.9620.1.S1_at--258--7391Chr03:10904303..10904327 (25 bp)
GTGAGCTCATCATTGGACAGTTTGT
LOC_Os03g19410
Os.9620.1.S1_at--850--2991Chr03:10904348..10904372 (25 bp)
AATGCAGTTTTGTGCTTGAACCAGA
LOC_Os03g19410
Os.9620.1.S1_at--986--7931Chr03:10904429..10904453 (25 bp)
GGATTTTTGCTGAAGGTTGCCATTC
LOC_Os03g19410
Os.9620.1.S1_at--300--6251Chr03:10904478..10904502 (25 bp)
GATGGATATTGCACCCTGATTGATT
LOC_Os03g19410
Os.9620.1.S1_at--511--111Chr03:10904551..10904575 (25 bp)
ATTCTCACCTAATAATGGCTCTGTA
LOC_Os03g19410
Os.9620.1.S1_at--1121--8311Chr03:10904567..10904591 (25 bp)
GGCTCTGTAGTCTGTCCAAGTATAT
LOC_Os03g19410
Os.9620.1.S1_at--902--1871Chr03:10904619..10904643 (25 bp)
ACGATGGATCCACTTGTCTTGAACT
LOC_Os03g19410
Os.9620.1.S1_at--354--6791Chr03:10904645..10904669 (25 bp)
GTTAGTCAGCTTTATGCTTGCATCA
LOC_Os03g19410
Target Sequence 
CACCATGTGAAGGTCCTGAGGCCGAGGGGTTCTCATCAATGCAAAGATCGCTTCTGTGATGAAGTGGTTTCGGTTGGCTG
TTTGTGAGCTCATCATTGGACAGTTTGTACAAGCCTGAAAGGATCATAAATGCAGTTTTGTGCTTGAACCAGAACTGGTT
CTTCTTGCTGCAAGTGGCAAGGAGTCACTACATTATGGAGTATTCGATTGGATTTTTGCTGAAGGTTGCCATTCCAGTGA
TGGAAAGGCCTTATTGATGATGGATATTGCACCCTGATTGATTTTACTCAATTGTTTTCTGTTGGTATAGAAACCAGTTA
AATCTAAAAATATTCTCACCTAATAATGGCTCTGTAGTCTGTCCAAGTATATATAAACTAGTGCCTACTAGGACTATAGA
CGATGGATCCACTTGTCTTGAACTTGTTAGTCAGCTTTATGCTTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis